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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DHTEITTDSLLALLGSEKVKIIDVRSADAYNGWRMRGEVRGGHIKGAKSLPAKWLTDPEWLNIVRFKQIRPEDAIVLYGY
TPEECEQTATRFKENGYNNVSVFHRFHPDWTGNDAFPMDRLEQYNRLVPAEWVNGLISGEEIPEYDNDTFIVCHAHYRNR
DAYLSGHIPGATDMDTLALESPETWNRRTPEELKKALEEHGITASTTVVLYGKFMHPDNADEFPGSAAGHIGAIRLAFIM
MYAGVEDVRVLNGGYQSWTDAGFAISKDDVPKTTVPEFGAPIPSRPEFAVDIDEAKEMLQSEDSDLVCVRSYPEYIGEVS
GANYIKKKGRIPGAIFAECGSDAYHMENYRNHDHTTREYHEIEDIWAKSGIIPKKHLAFYCGTGWRGSEAWFNALLMGWP
RVSVYDGGWFEWSNDPENPYETGVPK

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ktv:A 431 426 0.9977 0.9861 0.9977 0.0 6h98:A, 6h99:A, 6h9a:A, 6ktw:A, 6ktx:A, 6ktz:A, 6ku1:A, 6ku1:B, 6ku2:A, 6ku2:E, 6kvw:A, 6kvw:B, 6kvy:A, 6kvz:A, 6kw0:A, 6kw0:B
2 1h4k:X 271 262 0.1714 0.2694 0.2786 2.54e-11
3 1h4k:X 271 127 0.0775 0.1218 0.2598 0.26
4 1orb:A 293 273 0.1573 0.2287 0.2454 8.57e-11
5 4jgt:A 280 256 0.1479 0.2250 0.2461 1.86e-09 4jgt:B, 4jgt:C
6 5wqk:A 293 212 0.1291 0.1877 0.2594 3.41e-09 5wqj:A, 5wqj:B, 5wqk:B
7 5wqk:A 293 104 0.0634 0.0922 0.2596 0.55 5wqj:A, 5wqj:B, 5wqk:B
8 2eg3:A 230 267 0.1690 0.3130 0.2697 5.26e-05 2eg3:B, 2eg4:A, 2eg4:B
9 6mxv:B 251 44 0.0376 0.0637 0.3636 0.074
10 6mxv:B 251 44 0.0329 0.0558 0.3182 2.7
11 1qxn:A 137 65 0.0423 0.1314 0.2769 0.35 1qxn:B
12 6qtz:o 325 109 0.0657 0.0862 0.2569 1.3 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
13 6n8n:W 377 109 0.0657 0.0743 0.2569 1.8 6n8o:W
14 1cb7:B 483 57 0.0446 0.0393 0.3333 2.1 1cb7:D, 1ccw:B, 1ccw:D, 6h9e:B, 6h9e:D, 6h9f:B, 6h9f:D, 1i9c:B, 1i9c:D
15 4h7u:A 577 66 0.0469 0.0347 0.3030 2.8
16 7jmq:B 396 41 0.0399 0.0429 0.4146 3.8 1a50:B, 1a5a:B, 1a5b:B, 1a5s:B, 8b03:B, 8b05:B, 8b06:B, 8b08:B, 1beu:B, 1bks:B, 5bw6:B, 1c29:B, 6c73:B, 1c8v:B, 1c9d:B, 3cep:B, 5cgq:B, 2cle:B, 2clf:B, 2clh:B, 2cli:B, 2clk:B, 2cll:B, 2clm:B, 2clo:B, 1cw2:B, 1cx9:B, 6d0v:B, 2dh5:A, 6duc:B, 6dz4:B, 6dzo:B, 1fuy:B, 4hn4:B, 4hpj:B, 4hpx:B, 4ht3:B, 2j9x:B, 2j9y:B, 2j9z:B, 7jhw:B, 7jll:B, 7jqw:B, 7jtt:B, 7k0b:B, 1k3u:B, 7k5a:B, 1k7e:B, 1k7f:B, 1k7x:B, 1k8x:B, 1k8y:B, 1k8z:B, 7ka1:B, 7kbn:B, 1kfb:B, 1kfc:B, 1kfe:B, 1kfj:B, 1kfk:B, 7kh6:B, 7ki7:B, 4kkx:B, 7kmc:B, 7kq9:B, 7kqf:B, 7ku9:B, 7kwv:B, 7kxc:B, 7kyt:B, 7l03:B, 7l1h:B, 7l47:B, 7l4d:B, 7l5h:B, 7lev:B, 7lgx:B, 7lkl:B, 7lpf:B, 7lt4:B, 7ltp:B, 7lut:B, 7lv5:B, 7lvx:B, 7lx1:B, 7ly8:B, 7m2l:B, 7m3s:B, 7me8:B, 7mt4:B, 7mt5:B, 7mt6:B, 6o1h:B, 3pr2:B, 1qop:B, 1qoq:B, 2rh9:B, 1tjp:B, 2trs:B, 2tsy:B, 1ttp:B, 1ttq:B, 2tys:B, 1ubs:B, 6vfd:B, 6vnt:B, 1wbj:B, 6wdu:B, 2wsy:B, 4wx2:B, 6wx3:B, 6x0c:B, 6xe3:B, 6xin:B, 6xnc:B, 6xoy:B, 6xrh:B, 6xsy:B, 6xt0:B, 4xug:B, 4y6g:B, 4zqc:B
17 2rhg:B 364 32 0.0305 0.0357 0.4062 4.0
18 5ey5:B 383 40 0.0329 0.0366 0.3500 6.1 5ey5:D
19 4xfe:A 306 82 0.0540 0.0752 0.2805 7.3
20 3tp9:A 473 29 0.0282 0.0254 0.4138 7.6 3tp9:B
21 5kzm:B 395 41 0.0376 0.0405 0.3902 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218