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BioLiP
>protein
DHPFTEIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSDAKFVLHAKQNGI
IRRGHNWVFKADSYESMMSWFDNLKILTST

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4a6f:B 110 113 0.9273 0.9273 0.9027 4.89e-68 4a6f:A, 4a6h:A, 4a6h:C, 4a6h:B, 4a6h:D, 4a6k:A, 4a6k:C, 4a6k:B, 4a6k:D
2 9c1w:A 388 109 0.2455 0.0696 0.2477 0.002 8q61:A
3 6hhg:A 386 97 0.2000 0.0570 0.2268 0.063 4ejn:A, 6hhf:A, 6hhh:A, 7nh4:A, 7nh5:A, 3o96:A, 6s9x:A
4 6s9w:A 411 100 0.2000 0.0535 0.2200 0.74 6buu:A, 6buu:B, 6ccy:A, 3cqu:A, 3cqw:A, 4ekk:A, 4ekk:B, 4ekl:A, 4gv1:A, 1h10:A, 6hhi:A, 6hhj:A, 3mv5:A, 3mvh:A, 6npz:A, 6npz:B, 3ocb:A, 3ocb:B, 3ow4:A, 3ow4:B, 3qkk:A, 3qkl:A, 3qkm:A, 1unq:A, 2uvm:A, 8uvy:A, 8uw2:A, 8uw7:A, 8uw9:A, 2uzs:A
5 5u77:A 117 82 0.2182 0.2051 0.2927 1.2
6 6bbp:A 520 55 0.1182 0.0250 0.2364 1.5 2a5d:A, 2a5f:A, 2a5g:A, 6bbq:A, 1e0s:A, 1fgy:A, 1fhw:A, 1fhw:B, 1fhx:A, 1fhx:B, 4fme:C, 4fme:F, 2j5x:A, 2j5x:B, 4kax:A, 4kax:B, 3n5c:A, 3n5c:B, 3pcr:B, 2r09:A, 2r09:B, 2r0d:A, 2r0d:B, 3vhx:A, 3vhx:C, 3vhx:E, 3vhx:G, 2w83:A, 2w83:B, 2w83:E, 7xrd:A, 7xrd:B, 7xrd:C, 7xrd:D
7 6u3e:A 397 55 0.1182 0.0327 0.2364 1.9 6u3e:B, 6u3g:A, 6u3g:B
8 5yb0:B 349 64 0.2000 0.0630 0.3438 5.5 5yb0:A, 5yb0:C, 5yb0:D, 5yb0:E, 5yb0:F, 5yb0:G, 5yb0:H, 5yb0:I, 5yb0:J, 5yb0:K, 5yd2:A, 5yd2:B
9 3aj4:A 112 23 0.0909 0.0893 0.4348 7.6
10 6skl:4 679 67 0.1636 0.0265 0.2687 7.6 8kg9:4, 8xgc:4
11 8kg8:4 697 67 0.1636 0.0258 0.2687 7.7 8b9a:4, 8b9b:4, 8b9c:4, 8kg6:4, 8p5e:4, 8p62:4, 8p63:4, 7pmk:4, 7pmn:4, 7qhs:4, 6sko:4, 8w7m:4, 7z13:4, 7z13:c
12 6qwo:B 253 30 0.1000 0.0435 0.3667 8.6 6qwo:A
13 5v8f:4 741 67 0.1636 0.0243 0.2687 9.0 5bk4:C, 5bk4:4, 6eyc:4, 6f0l:C, 3ja8:4, 7p30:4, 7p30:C, 7p5z:C, 7p5z:4, 7pt6:4, 7pt6:D, 7pt7:4, 7pt7:D, 6rqc:4, 7v3u:4, 7v3u:D, 7v3v:4, 7v3v:D, 7w8g:4, 7w8g:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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