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BioLiP
>protein
DHCARHGEKLLLFCQEDSKVICWLCERSQEHRGHHTFLMEEVAQEYHVKLQTALEMLRQKQQEAETERNQVAALIARGKA
LGEQTQYMRELISELEHRLQGSMMDLLQGVDGIIKRIE

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eiu:A 134 130 1.0000 0.8806 0.9077 4.49e-80 5eiu:D, 5f7t:E, 5f7t:F, 5f7t:H, 5f7t:L, 5iea:A, 5iea:B, 5iea:C, 5iea:D, 5iea:F, 5iea:K
2 5va4:A 123 121 0.8051 0.7724 0.7851 7.22e-64
3 4tn3:B 362 166 0.8559 0.2790 0.6084 1.46e-58 5k3q:A, 5k3q:B, 5k3q:C, 5k3q:D, 4tn3:A, 5w9a:A, 5w9a:B
4 2yrg:A 59 37 0.3051 0.6102 0.9730 1.07e-22
5 5olm:B 132 40 0.1610 0.1439 0.4750 1.82e-08 5jpx:A, 5olm:A
6 7xyz:B 456 112 0.2712 0.0702 0.2857 2.07e-07 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
7 7xt2:B 388 111 0.2797 0.0851 0.2973 4.74e-06 7xt2:A
8 1ser:B 421 60 0.2203 0.0618 0.4333 6.55e-06 1ses:A, 1ses:B, 1set:A, 1set:B
9 2csv:A 72 34 0.1441 0.2361 0.5000 6.47e-05
10 2did:A 53 32 0.1271 0.2830 0.4688 7.37e-05 2dif:A
11 2egm:A 57 37 0.1186 0.2456 0.3784 8.20e-04
12 1fre:A 39 35 0.1017 0.3077 0.3429 0.003
13 2dja:A 84 55 0.1525 0.2143 0.3273 0.076
14 4cg4:C 376 83 0.1949 0.0612 0.2771 0.43 4cg4:D, 4cg4:E, 4cg4:F
15 2jun:A 101 34 0.1017 0.1188 0.3529 0.56 2dq5:A
16 8jwu:C 412 45 0.1186 0.0340 0.3111 2.8 8jwj:A, 8jwj:C, 8jws:A, 8jws:B, 8jws:C, 8jwu:A, 8jwu:B
17 8pv6:Ch 389 44 0.1271 0.0386 0.3409 3.2 8pv8:Ch
18 2asb:A 226 29 0.1017 0.0531 0.4138 3.5 2atw:A, 2atw:C
19 7cpx:A 2262 41 0.1186 0.0062 0.3415 3.7 7cpx:B, 7cpy:A, 7cpy:B
20 8i9x:CJ 494 50 0.1356 0.0324 0.3200 4.2 8i9p:CJ, 8i9r:CJ, 8i9t:CJ, 8i9v:CJ, 8i9w:CJ, 8i9y:CJ, 8i9z:CJ, 8ia0:CJ, 8pv1:CJ, 8pv2:CJ, 8pv3:CJ, 8pv4:CJ, 8pv6:CJ, 8pv7:CJ, 8pvk:CJ, 8pvl:CJ
21 3pwu:A 274 50 0.1017 0.0438 0.2400 4.8 3pwv:A, 3pwv:D
22 6r1n:A 420 79 0.1525 0.0429 0.2278 5.9
23 3s27:H 797 53 0.1356 0.0201 0.3019 8.8 3s27:A, 3s27:B, 3s27:C, 3s27:D, 3s27:E, 3s27:F, 3s27:G, 3s28:A, 3s28:B, 3s28:C, 3s28:D, 3s28:E, 3s28:F, 3s28:G, 3s28:H, 3s29:A, 3s29:B, 3s29:C, 3s29:D, 3s29:E, 3s29:F, 3s29:G, 3s29:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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