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BioLiP
>protein
DGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKP

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j4g:B 58 58 1.0000 1.0000 1.0000 5.78e-39
2 6j4f:B 63 58 0.8276 0.7619 0.8276 3.17e-30 6j4f:F
3 7d11:A 79 58 0.6724 0.4937 0.6724 4.01e-25 6j4e:B
4 2ayd:A 76 59 0.5862 0.4474 0.5763 1.33e-18
5 8k31:B 79 59 0.5862 0.4304 0.5763 2.73e-17
6 7z0r:A 81 60 0.5172 0.3704 0.5000 4.81e-17 7z0r:B, 7z0u:A
7 1wj2:A 71 59 0.5690 0.4648 0.5593 5.42e-17 2lex:A
8 8iex:A 88 57 0.5690 0.3750 0.5789 1.13e-16
9 5w3x:D 73 62 0.4655 0.3699 0.4355 3.13e-13 7p8k:B, 5w3x:B
10 6ir8:A 69 57 0.3448 0.2899 0.3509 9.95e-08
11 2bjr:A 363 49 0.2586 0.0413 0.3061 0.69 2bjr:B
12 6gaw:BC 571 15 0.1552 0.0158 0.6000 2.0 6gaz:BC, 6gb2:BC, 7po2:7, 8qrn:7, 6rw5:7
13 6pbm:A 426 29 0.1724 0.0235 0.3448 2.5 6c4n:A, 6c4n:B, 6pbm:B, 6pbn:A, 6pbn:B, 6pbp:A, 6pbp:B, 6pbt:A, 6pbt:B
14 1otw:A 255 56 0.3276 0.0745 0.3393 6.2 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
15 7dm0:A 167 31 0.1897 0.0659 0.3548 6.2 7dm0:B
16 7dm0:A 167 31 0.1897 0.0659 0.3548 6.2 7dm0:B
17 5zee:B 297 24 0.1897 0.0370 0.4583 9.9 5zee:A, 5zef:A, 5zef:B, 5zeh:A, 5zeh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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