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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DGVVSALSLRERIREHLSSSVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLQE
SVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSETDRLLAKLAYMRSGLGCDVIILDHISI
VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQMP
NLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPSSY

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6n9x:B 500 279 0.9819 0.5420 0.9713 0.0 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
2 1cr1:A 245 274 0.8587 0.9673 0.8650 8.76e-163 1cr2:A, 1cr4:A
3 8a3v:A 450 229 0.2065 0.1267 0.2489 4.96e-08 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F
4 6bbm:A 405 235 0.2174 0.1481 0.2553 2.42e-07
5 6bbm:D 455 235 0.2174 0.1319 0.2553 3.18e-07 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
6 8e2l:C 461 279 0.2246 0.1345 0.2222 3.80e-07 8e2l:A, 8e2l:B, 8e2l:D, 8e2l:E, 8e2l:F
7 4esv:C 434 221 0.1667 0.1060 0.2081 9.03e-05 4esv:A, 4esv:B, 4esv:D, 4esv:E, 4esv:F, 4esv:G, 4esv:H, 4esv:I, 4esv:J, 4esv:K, 4esv:L, 2vye:A, 2vye:B
8 5lkm:A 390 227 0.1812 0.1282 0.2203 0.11 5lkm:C
9 3fvq:B 350 44 0.0580 0.0457 0.3636 0.94 3fvq:A
10 8i6r:B 222 34 0.0471 0.0586 0.3824 1.4 8i6r:D, 8i6s:B, 8i6s:D
11 7sjk:A 266 49 0.0471 0.0489 0.2653 1.9 7sjk:B, 7sp2:A
12 3c41:J 242 30 0.0580 0.0661 0.5333 2.4 3c41:K, 3c4j:A, 3c4j:B, 2olj:A, 2olj:B, 2olk:A, 2olk:B, 2olk:C, 2olk:D, 2q0h:A, 2q0h:B
13 5ub4:B 279 123 0.1196 0.1183 0.2683 3.3 5ub4:A, 5ub6:A, 5ub6:B, 5ub7:A, 5ub7:B
14 6nak:D 165 25 0.0399 0.0667 0.4400 4.0 6n9a:E, 6nak:E, 6s84:E, 6s84:B
15 6z4w:A 230 34 0.0435 0.0522 0.3529 4.0 6z63:A, 6z63:B, 6z63:C, 6z67:C, 6z67:B, 6z67:E
16 7wbt:A 899 31 0.0362 0.0111 0.3226 4.1 7wbt:B, 7wbu:A
17 3fjo:A 603 89 0.0761 0.0348 0.2360 4.2 3qfs:A, 3qft:A
18 4ak2:A 286 57 0.0725 0.0699 0.3509 5.2
19 1ewq:A 759 22 0.0399 0.0145 0.5000 8.2 1ewq:B, 1fw6:A, 1fw6:B, 1nne:A, 1nne:B
20 3bk7:A 593 24 0.0435 0.0202 0.5000 8.3 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
21 6r84:A 446 44 0.0652 0.0404 0.4091 8.5
22 5ubv:A 244 59 0.0580 0.0656 0.2712 8.8 5ubv:B
23 7kya:A 1174 40 0.0580 0.0136 0.4000 9.9 7ky5:A, 7ky7:A, 7ky8:A, 7ky9:A
24 4v7e:Cf 111 79 0.0652 0.1622 0.2278 10.0 8jiv:Cf, 4v3p:Lj

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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