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BioLiP
>protein
DGVDIYFGMPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQR
LVETHATRVIALINDQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHT
HLQVIEERVNQSLGLLDQNPHLAQELRPQIQELLHS

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3q7g:A 203 196 1.0000 0.9655 1.0000 1.60e-142 3pmr:A, 3pmr:B, 3q7g:B, 3q7l:A, 3q7l:B, 3qmk:A, 3qmk:B, 4rda:A, 4rda:B
2 5buo:A 185 181 0.4745 0.5027 0.5138 2.05e-60 3umi:A, 3umk:A
3 3k6b:A 217 194 0.3010 0.2719 0.3041 2.39e-26
4 3vwd:A 196 78 0.1071 0.1071 0.2692 0.71 4b5o:A, 4b5p:A, 4b5p:B, 4gs4:A, 4if5:A, 4pk2:A, 4pk3:A, 4u9y:A, 4u9z:A, 3vwe:A
5 6l5n:A 377 69 0.1020 0.0531 0.2899 0.75 6l5m:A, 6l5m:B, 6l5m:C, 6l5m:D, 6l5m:E, 6l5n:B, 6l5o:A
6 7ezx:M1 162 50 0.0867 0.1049 0.3400 1.2 7ezx:I1, 7ezx:E1, 7ezx:E7, 7ezx:K7, 7ezx:I7, 7ezx:G7, 7ezx:C7, 7ezx:M9, 7ezx:K9, 7ezx:I9, 7ezx:G9, 7ezx:E9, 7ezx:C9, 7ezx:MF, 7ezx:KF, 7ezx:IF, 7ezx:GF, 7ezx:EF, 7ezx:CF, 7ezx:MI, 7ezx:KI, 7ezx:II, 7ezx:GI, 7ezx:EI, 7ezx:CI, 7ezx:MK, 7ezx:EK, 6kgx:M2, 6kgx:G2, 6kgx:I2, 6kgx:E2, 6kgx:M6, 6kgx:G6, 6kgx:I6, 6kgx:K6, 6kgx:E6, 6kgx:C6, 6kgx:G7, 6kgx:E7, 6kgx:MB, 6kgx:GB, 6kgx:IB, 6kgx:KB, 6kgx:EB, 6kgx:CB, 6kgx:IF, 6kgx:GF, 6kgx:EF, 6kgx:MF, 6kgx:MI, 6kgx:GI, 6kgx:II, 6kgx:EI, 7y4l:MB, 7y4l:GB, 7y4l:IB, 7y4l:EB, 7y4l:IC, 7y4l:GC, 7y4l:EC, 7y4l:MC, 7y4l:MD, 7y4l:GD, 7y4l:ID, 7y4l:KD, 7y4l:ED, 7y4l:CD, 7y4l:ME, 7y4l:IE, 7y4l:GE, 7y4l:KE, 7y4l:EE, 7y4l:CE, 7y4l:E2, 7y4l:M2, 7y4l:I2, 7y4l:G2, 7y4l:G6, 7y4l:I6, 7y4l:E6, 7y4l:M6, 7y4l:KC, 7y5e:ME, 7y5e:GE, 7y5e:IE, 7y5e:KE, 7y5e:EE, 7y5e:CE, 7y5e:MG, 7y5e:GG, 7y5e:IG, 7y5e:KG, 7y5e:EG, 7y5e:CG, 7y5e:IH, 7y5e:GH, 7y5e:EH, 7y5e:MH, 7y5e:MO, 7y5e:GO, 7y5e:IO, 7y5e:EO, 7y5e:E1, 7y5e:M1, 7y5e:I1, 7y5e:G1, 7y5e:G4, 7y5e:I4, 7y5e:E4, 7y5e:M4, 7y7a:M1, 7y7a:G1, 7y7a:I1, 7y7a:K1, 7y7a:E1, 7y7a:C1, 7y7a:M4, 7y7a:G4, 7y7a:I4, 7y7a:E4, 7y7a:M8, 7y7a:G8, 7y7a:I8, 7y7a:K8, 7y7a:E8, 7y7a:C8, 7y7a:II, 7y7a:GI, 7y7a:EI, 7y7a:MI, 7y7a:MK, 7y7a:GK, 7y7a:IK, 7y7a:KK, 7y7a:EK, 7y7a:CK, 7y7a:IP, 7y7a:GP, 7y7a:EP, 7y7a:MP, 7y7a:MR, 7y7a:GR, 7y7a:IR, 7y7a:KR, 7y7a:ER, 7y7a:CR, 7y7a:CS, 7y7a:IS, 7y7a:GS, 7y7a:ES, 7y7a:MS, 7y7a:Me, 7y7a:Ge, 7y7a:Ie, 7y7a:Ee, 7y7a:Mj, 7y7a:Gj, 7y7a:Ij, 7y7a:Ej, 7y7a:Cl, 7y7a:Il, 7y7a:Gl, 7y7a:El, 7y7a:Ml, 7y7a:Mn, 7y7a:Gn, 7y7a:In, 7y7a:En
7 1osn:A 325 95 0.1071 0.0646 0.2211 2.1 1osn:B, 1osn:C, 1osn:D
8 7xe4:F 1503 29 0.0663 0.0086 0.4483 2.7 7yuy:F
9 3kvs:A 161 50 0.0867 0.1056 0.3400 4.7 3brp:A
10 6pw4:A 696 43 0.0765 0.0216 0.3488 5.1 6pw4:C
11 6pw5:A 734 43 0.0765 0.0204 0.3488 5.1 6pw5:C
12 6pw5:B 782 43 0.0765 0.0192 0.3488 5.1 6pw5:D
13 6pw4:B 675 43 0.0765 0.0222 0.3488 6.3 6pw4:D
14 7dz9:B 260 33 0.0714 0.0538 0.4242 7.0 7dz9:A
15 7nyx:A 1467 95 0.1276 0.0170 0.2632 9.9 7nyx:B, 7nyz:A, 7nyz:B, 7nz0:B, 7nz0:A, 7nz2:A3, 7nz2:B3, 7nz2:A4, 7nz2:B4, 7nz2:A1, 7nz2:B1, 7nz2:A2, 7nz2:B2, 7nz3:A1, 7nz3:B1, 7nz3:A2, 7nz3:B2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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