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BioLiP
>protein
DGSMVPPEWHRWLHCMTYIWHKFNVSGQQYVPYSTTR

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ugp:1q 37 37 1.0000 1.0000 1.0000 6.42e-24
2 8ugh:1q 145 54 1.0000 0.2552 0.6852 5.93e-16 5lnk:i, 8ugj:1q, 8ugn:1q, 8ugn:5q, 8ugr:1q, 8ugr:5q, 7v2c:N, 7v2f:N, 7v2r:N, 7v30:N, 7v32:N, 7v3m:N, 7vb7:N, 7vbn:N, 7vwj:N, 7vxp:N, 7vxu:N, 7vy8:N, 7vya:N, 7vyh:N, 7vz1:N, 7vzv:N, 7vzw:N, 7w0h:N, 7w0y:N, 7w1p:N, 7w1t:N, 7w1v:N, 7w1z:N, 7w20:N, 7w2k:N, 7w2y:N, 7w31:N, 7w35:N, 7w4c:N, 7w4d:N, 7w4f:N, 7w4j:N, 7w4k:N, 7w4l:N, 7w4n:N, 7w4q:N
3 8cxo:A 551 24 0.2703 0.0181 0.4167 2.4
4 6bt2:B 271 28 0.3243 0.0443 0.4286 3.0
5 8qby:q 124 14 0.2162 0.0645 0.5714 3.4
6 4n4w:A 457 24 0.2703 0.0219 0.4167 3.7 4jkv:A, 4jkv:B
7 5v57:A 645 24 0.2703 0.0155 0.4167 4.3 1akq:A, 1akr:A, 1akt:A, 1aku:A, 1akv:A, 1akw:A, 1azl:A, 1bu5:A, 1bu5:B, 1c7e:A, 1c7e:B, 1c7f:A, 1c7f:B, 1f4p:A, 1fx1:A, 2fx2:A, 3fx2:A, 4fx2:A, 5fx2:A, 1i1o:A, 1j8q:A, 1j9e:A, 1j9g:A, 5v56:A, 5v56:B, 5v57:B, 1wsb:A, 1wsw:A, 1xt6:A, 1xyv:A, 1xyy:A, 5yob:A, 5yoc:A, 5yoe:A, 5yog:A
8 7zi0:A 593 24 0.2703 0.0169 0.4167 4.5 256b:A, 256b:B, 5l7d:A, 5l7i:A, 5l7i:B, 4o9r:A, 4qim:A, 4qin:A, 1qpu:A, 7zi0:B
9 6o3c:A 484 24 0.2703 0.0207 0.4167 7.5 6ot0:R, 6xbj:R, 6xbk:R, 6xbl:R, 6xbm:R
10 4wd1:A 646 13 0.2162 0.0124 0.6154 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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