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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DGLSNLARRLRFAMKEGSIWLGEQRMILLHTAALGALRKELVDTLGMERARGLFMRMGFHSGVRDAELAKTMRSGHSDFG
MLEMGPCLHTIEGVVRVTPLTVDINIAAGVYHGEFLWEDSFEGDVHRQMFGVAQAPVCWMQIGYATGYTSALMGKTILYR
ELECVGCGHPHCRILGKPLEQWEDGEAELALYQP

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5frw:A 201 194 1.0000 0.9652 1.0000 7.71e-145 5fru:A, 5fru:B, 5frv:A, 5frv:B, 5frw:B, 5frx:A, 5frx:B, 5fry:A, 5fry:B, 5frz:A, 5frz:B, 5fs0:A, 5fs0:B
2 6iy8:A 469 175 0.4278 0.1770 0.4743 4.09e-62 6iy8:B, 6iy8:C, 6iy8:D
3 5kbe:B 206 183 0.3866 0.3641 0.4098 1.31e-53 5kbe:A, 5kbg:A, 5kbg:B, 5kbh:A, 5kbh:B, 5kbi:A, 5kbi:B, 7vqf:A
4 5j8b:z 671 108 0.1598 0.0462 0.2870 0.026 5imq:B
5 5imr:C 570 107 0.1495 0.0509 0.2710 0.35
6 1g82:A 157 39 0.0773 0.0955 0.3846 0.76
7 3f1r:A 157 45 0.0825 0.1019 0.3556 1.8 3f1r:B
8 7jil:F 176 67 0.0979 0.1080 0.2836 2.0
9 6ori:A 381 35 0.0670 0.0341 0.3714 3.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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