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BioLiP
>protein
DGKLVVSKAHFGNMIRNCQSVEDFKKSFERLTYYSSENRESTVRQRLKIAEKEYNFKAGVKEDLEIKNTTDKEILDYVRN
ELSKIDSK

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ye6:B 88 88 1.0000 1.0000 1.0000 3.27e-60
2 5mrc:H 160 31 0.1136 0.0625 0.3226 0.73 3j6b:H, 5mre:H, 5mrf:H
3 5hsj:A 606 44 0.2159 0.0314 0.4318 1.6 5hsj:B
4 6x1j:A 226 40 0.1364 0.0531 0.3000 1.7
5 5v6l:L 215 53 0.1818 0.0744 0.3019 2.4 5ds8:L, 5dtf:L, 5dtf:B, 5dub:L, 5v6l:M
6 7ccf:A 405 25 0.1136 0.0247 0.4000 3.2 5gwe:A, 5gwe:B, 5gwe:C, 5gwe:D, 5xjn:A
7 2d1r:A 539 17 0.1023 0.0167 0.5294 3.9 2d1q:A, 2d1s:A, 2d1t:A
8 5ffj:A 1044 43 0.1705 0.0144 0.3488 4.8
9 5ffj:B 1232 43 0.1705 0.0122 0.3488 5.2
10 6zxf:y 233 69 0.1932 0.0730 0.2464 5.2
11 6g18:y 325 69 0.1932 0.0523 0.2464 6.1 6g4s:y, 6g51:y, 6g53:y, 6g5i:y, 7wtw:y, 7wtx:y, 7wtz:y, 7wu0:y, 6zuo:y, 6zxd:y, 6zxe:y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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