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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DFYKLDEKLKELKRKRVDVSIKSRKLADREIQEVSEKAFHYTVQEYDAWERRISYDQLAKLSYEKTLRNLATQTKVQKDT
KTGKITIADDDKLVNKLAVSLQSESKKRYEARKRQMQNINDKNKQFNEKLSRES

The query sequence (length=134) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7b9v:y 134 134 1.0000 1.0000 1.0000 6.27e-93 6exn:y, 5mps:y, 5mq0:y
2 5gm6:f 102 99 0.6119 0.8039 0.8283 7.83e-47 6bk8:R, 5gmk:I, 6j6g:I, 6j6h:I, 6j6n:I, 6j6q:I, 5wsg:I, 5y88:K, 5ylz:K
3 8e73:G2 258 46 0.1343 0.0698 0.3913 0.84 6x89:G2
4 7nhn:d 204 84 0.1866 0.1225 0.2976 1.3 8uu4:c, 8uu5:c, 8uu6:c, 8uu7:c, 8uu8:c, 8uu9:c
5 6qm5:A 673 34 0.0896 0.0178 0.3529 5.4 6qm5:B, 6qm9:A, 6qm9:B, 6qma:A, 6qma:B, 6qmb:A, 6qmb:B, 8toi:A, 8toi:B, 8tok:A, 8tok:B, 8tol:A, 8tol:B, 4wis:A, 4wis:B, 4wit:A, 4wit:B
6 8a3y:A 1426 78 0.1716 0.0161 0.2949 6.7 8oeu:A, 8oev:A, 8oew:A, 8of0:A, 7okx:A, 7oky:A, 7ol0:A, 7pks:A, 8rbx:A, 6ted:A, 8uhg:A, 8ui0:A, 7unc:A, 7und:A
7 7jgh:A 1421 40 0.0896 0.0084 0.3000 8.6
8 8i0u:R 380 27 0.0896 0.0316 0.4444 9.0 8c6j:K, 8i0s:R, 8i0t:R, 8i0v:R, 8i0w:R, 6icz:R, 6id0:R, 6id1:R, 5mqf:C, 6qdv:K, 7w59:R, 7w5a:R, 7w5b:R, 5xjc:R, 5yzg:R, 6zym:C
9 9fmd:R 328 27 0.0896 0.0366 0.4444 9.3 8ro2:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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