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BioLiP
>protein
DFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rdv:D 72 71 1.0000 0.9861 1.0000 2.72e-48 3rdv:A, 3rdv:B, 3rdv:C
2 2e4h:A 74 70 0.5493 0.5270 0.5571 3.43e-26
3 2hl3:A 76 68 0.4648 0.4342 0.4853 2.17e-17 3e2u:A, 3e2u:D, 3e2u:B, 3e2u:C, 2hqh:A, 2hqh:B, 2hqh:C, 2hqh:D
4 6fc6:A 83 55 0.3099 0.2651 0.4000 2.39e-06
5 4n67:A 214 42 0.1831 0.0607 0.3095 1.1
6 4pz2:B 494 47 0.2535 0.0364 0.3830 1.7 4pz2:A, 4pz2:C, 4pz2:D
7 8wnf:A 918 40 0.1972 0.0153 0.3500 2.0 8wng:A, 8wni:A, 8wnj:A, 8wo2:A, 8wo3:A
8 3tu6:A 127 50 0.1972 0.1102 0.2800 3.4
9 3rsj:A 406 55 0.2394 0.0419 0.3091 4.2 3rsj:B, 3rsj:C, 3rsj:D
10 8vd8:A 466 25 0.1408 0.0215 0.4000 5.5 8vdc:A
11 2f3m:A 218 18 0.1268 0.0413 0.5000 6.2 2f3m:B, 2f3m:C, 2f3m:D, 2f3m:E, 2f3m:F, 1xw6:A, 1xw6:B, 1xw6:C, 1xw6:D, 1xwk:A, 1xwk:B, 1xwk:C, 1yj6:A, 1yj6:B, 1yj6:C
12 5dt6:A 266 14 0.1127 0.0301 0.5714 9.8 5ict:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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