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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DFQQPYTSFVQTKQNRDGLYALLRNTENPRMHFYQELQSDMYCTTITDGNSLAPFVNWDLGILNDHGRADEDEVSGIAGY
YFVYNRLNQQANAFVNNTEAALQNQVYKNSTEIANAKSFLAEGKVLQALAIWRLMDRFSFHESVTEVNSGAKDLGVILLK
EYNPGYIGPRATKAQCYDYILSRLSEAIEVLPENRESVLYVSRDYAYALRARIYLALGEYGKAAADAKMVVDKYPLIGAA
DASEFENIYRSDANNPEIIFRGFASATLGSFTATTLNGAAPAGKDIKYNPSAVPFQWVVDLYENEDFRKSVYIAKVVKKD
KGYLVNKFLEDKAYRDVQDKPNLKVGARYFSVAEVYLILVESALQTGDTPTAEKYLKALSKARGAEVSVVNMEALQAERT
RELIGEGSRLRDMVRWSIPNNHDAFETQPGLEGFANTTPLKAQAPVGFYAYTWEFPQRDRQTNPQLIKNWPI

The query sequence (length=472) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sli:A 482 472 1.0000 0.9793 1.0000 0.0 5cx8:A, 5cx8:B, 6sli:C, 6sli:F, 6sli:I, 6slj:D, 6slj:C, 6sln:C, 6sln:D, 6sm3:A, 6smq:A
2 3kez:B 448 349 0.1864 0.1964 0.2521 1.36e-11 3kez:A
3 3mcx:A 459 393 0.2013 0.2070 0.2417 5.00e-10
4 3jys:A 479 370 0.1864 0.1837 0.2378 8.30e-05
5 3l22:A 429 429 0.2034 0.2238 0.2238 2.08e-04
6 3jq1:B 464 106 0.0593 0.0603 0.2642 0.082 3jq1:A
7 7kv3:AAA 467 142 0.0678 0.0685 0.2254 0.24
8 5lyn:B 133 89 0.0551 0.1955 0.2921 0.43 5lyn:A
9 3ck9:B 515 163 0.0869 0.0796 0.2515 1.4 3ck7:A, 3ck7:B, 3ck7:C, 3ck7:D, 3ck8:A, 3ck8:B, 3ck9:A, 3ckb:A, 3ckb:B, 3ckc:A, 3ckc:B
10 5cjz:A 603 106 0.0572 0.0448 0.2547 3.9 5ck1:A
11 5cjz:A 603 43 0.0360 0.0282 0.3953 4.5 5ck1:A
12 3b2d:A 601 89 0.0466 0.0366 0.2472 4.1 3b2d:B
13 1qz7:A 524 67 0.0424 0.0382 0.2985 5.3 7afw:A, 7ar4:AAA, 4djs:A, 8ei9:A, 8eia:A, 8eib:A, 8eic:A, 2gl7:A, 2gl7:D, 1i7w:A, 1i7w:C, 1jpp:A, 1jpp:B, 1jpw:A, 1jpw:B, 1jpw:C, 3ouw:A, 8ru3:A, 8ru4:A, 8ru4:B, 3sl9:A, 3sl9:E, 3sl9:B, 3sl9:G, 1t08:A, 7uwi:A, 7uwo:A, 8y0p:A, 8y0p:B, 8z10:A
14 5hwa:A 259 26 0.0318 0.0579 0.5769 6.1
15 3so1:H 89 53 0.0424 0.2247 0.3774 6.9 5ht8:A, 3i9h:A, 3i9h:B, 3i9h:C, 3i9h:D, 3i9h:E, 3i9h:F, 3i9h:G, 3i9h:H, 3iaj:A, 3sny:A, 3snz:A, 3so0:A, 3so0:B, 3so0:C, 3so0:D, 3so0:E, 3so0:F, 3so0:G, 3so1:A, 3so1:B, 3so1:C, 3so1:D, 3so1:E, 3so1:F, 3so1:G
16 1a2s:A 89 16 0.0191 0.1011 0.5625 8.9 1ced:A, 1ctj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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