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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DFNLKVVLVSFKQCLTDKGEVLLDHYIAGWKGLVRFLNSLGAVFSFISKDVVAKLQIMERLRSSPQSEHYTSLQSMVAYE
VSNKLVDRHPHSGCRTVLRLHRALHWLQLFLDGLRTSSEDARTSTLCSEAYNATLANYHSWIVRQAVTVAFCALPSRKVF
LEAMNMESTEQAVEMLGEALPFIEHVYDISQKLYAEHSLLDLP

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kbr:B 207 207 0.9951 0.9758 0.9758 3.33e-149 4kbr:A, 4kbr:C, 4kbr:D, 4kbr:F, 4kbr:G, 4kbr:H
2 4k80:A 209 207 0.7931 0.7703 0.7778 6.99e-120 4k84:A, 4k84:B, 4k85:A, 4k85:B, 4k85:C, 4k85:D, 4k8n:A, 4k8n:E, 4k8n:B, 4k8n:C, 4k8n:D, 4k8n:F, 4kf6:A, 4kf6:B, 4kf6:C, 4kf6:D, 4kf6:E, 4kf6:F
3 5kdi:A 211 196 0.2611 0.2512 0.2704 2.21e-12 5kdi:B
4 4nti:A 202 153 0.1823 0.1832 0.2418 7.15e-09 4nt2:A, 4ntg:A, 4ntg:B, 4nti:B, 4nto:A, 4nto:B, 4nto:C
5 4gxg:A 209 140 0.1872 0.1818 0.2714 3.10e-07 2bv7:A, 2euk:A, 2eum:A, 2evd:A, 2evl:A, 2evs:A, 2evs:E, 4gh0:A, 4ghp:A, 4ghs:A, 4ghs:B, 4gix:A, 4gjq:A, 4gjq:B, 4gvt:A, 4gxd:A, 4gxg:B, 4gxg:D, 4gxg:E, 4h2z:A, 3ric:A, 3rzn:A, 3s0i:A, 3s0k:A, 1sx6:A
6 4kir:A 460 79 0.1330 0.0587 0.3418 0.97 4kir:B, 4kqn:A, 4kqn:B, 1yny:A, 1yny:B
7 6mkq:A 262 57 0.0788 0.0611 0.2807 1.7
8 3sfw:A 461 79 0.1281 0.0564 0.3291 2.0 3sfw:B
9 7urg:A 401 49 0.1034 0.0524 0.4286 2.2 7urg:B
10 2amh:A 195 67 0.0788 0.0821 0.2388 3.7
11 3n7x:A 299 56 0.0887 0.0602 0.3214 3.7
12 3n6r:G 646 34 0.0640 0.0201 0.3824 4.5 3n6r:I, 3n6r:K
13 1bul:A 265 28 0.0493 0.0377 0.3571 6.5
14 3n6r:A 591 115 0.1429 0.0491 0.2522 6.9 3n6r:C, 3n6r:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218