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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DFLSNFLTDFVGQLQSPTLAFLIGGMVIAALGTQLVIPEAISTIIVFMLLTKIGLTGGMAIRNSNLTEMLLPVAFSVILG
ILIVFIARFTLAKLPNVRTVDALATGGLFGAVSGSTMAAALTTLEESKISYEAWAGALYPFMDIPALVTAIVVANIYLNK
RKRRVKIWPIIEESLQGPALSAMLLGLALGIFTKPESVYEGFYDPLFRGLLSILMLIMGMEAWSRIGELRKVAQWYVVYS
LIAPIVHGFIAFGLGMIAHYATGFSLGGVVVLAVIAASSSDISGPPTLRAGIPSANPSAYIGSSTAIGTPIAIGVCIPLF
IGLAQTLGAG

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7egl:A 335 335 1.0000 0.9851 0.9851 0.0 7egk:A, 7egk:C, 7egk:E
2 4x4j:A 482 60 0.0606 0.0415 0.3333 4.0 4x4j:B
3 5kxq:A 327 31 0.0333 0.0336 0.3548 8.2 5kxq:B, 5kxq:C, 5kxq:D
4 7tbj:A5 1276 31 0.0455 0.0118 0.4839 8.6 5hax:A, 5hb0:B, 5hb0:C, 5hb0:A, 7tbi:A1, 7tbi:A2, 7tbi:A3, 7tbi:A4, 7tbj:A1, 7tbj:A3, 7tbj:A6, 7tbk:A1, 7tbk:A3, 7tbk:A5, 7tbk:A6, 7tbl:A1, 7tbl:A3, 7tbl:A5, 7tbl:A6, 7tbm:A1, 7tbm:A3, 7tbm:A5, 7tbm:A6
5 7tbj:A2 1269 31 0.0455 0.0118 0.4839 8.8 7tbj:A4, 7tbk:A2, 7tbk:A4, 7tbl:A2, 7tbl:A4, 7tbm:A2, 7tbm:A4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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