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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DFKSGLRLDGDVWVNSIRLDEYAGTVDYQNKAIVVGVPYDYDITRMVVTEMNLSEGAKASIAIGETIDFSLPVSLTVKNG
DVQMSYTITVKRDEAKILTFKLNDTYVGKVDQLSKTISVVVPLTVDITQLKGTFTVTDGATVTPASGSIQDFTNPVTYTA
TYRSAVTPYVVTVTQGNVIPTAFVGTASSVSLLTSPEEKAAAQWMMDNVSMSEYISFKDVVDGKVDLGKYTAIWWHFHAD
NGDNPPLPDDAKAAAEKFKVYYQNGGNLLLTRYATFYIANLGIAKDERVPNNSWGGNEDSPEITSAPWSFLITGSESHPL
FQDLRWKDGDKSTVYTCDAGYAITNSTAQWHIGTDWGGYDDLNAWRNLTGGIDLAHGGDGAVVIAEFEPRSNSGRTLCIG
SGCYDWYGKGVDASADYYHYNVEQMTLNAINYLCK

The query sequence (length=435) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8aa2:G 435 435 1.0000 1.0000 1.0000 0.0
2 3hbz:A 341 69 0.0575 0.0733 0.3623 6.77e-04
3 7oqy:Y 92 55 0.0414 0.1957 0.3273 0.56
4 7d6v:A 601 71 0.0575 0.0416 0.3521 0.93 7d6x:A
5 4ak7:B 373 80 0.0575 0.0670 0.3125 1.5 4ak7:A
6 8q6p:7 298 82 0.0529 0.0772 0.2805 2.7
7 4bwi:A 381 44 0.0299 0.0341 0.2955 5.4 4bwi:B
8 5ta9:A 369 80 0.0552 0.0650 0.3000 6.8 5ta9:B, 5ta9:C, 5ta9:D
9 4jnq:A 315 36 0.0322 0.0444 0.3889 7.6
10 2fgy:A 471 68 0.0460 0.0425 0.2941 9.7 2fgy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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