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BioLiP
>protein
DFETDESVLMRRQKQINYGKNTIAYDRYIKEVPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qoz:C 73 73 1.0000 0.9178 0.9178 9.06e-44 4l8r:C
2 4tuw:A 71 67 0.5522 0.5211 0.5522 1.10e-23 4tuw:B, 4tux:B, 4tux:A
3 4tv0:A 47 60 0.4030 0.5745 0.4500 2.07e-12
4 5fix:A 624 47 0.2388 0.0256 0.3404 0.19 5fix:B, 6fje:B, 6fje:A, 6fjg:A, 6fjg:B, 5fk7:A, 5fk7:B, 5fk8:A, 5fk8:B, 5fkb:A, 5fkb:B, 5fkc:A, 5fkc:B, 5fmb:A, 5fmb:B, 5fmc:A, 5fmc:B, 5fmd:A, 5fmd:B, 5nsl:A, 5nsl:B, 5o47:B, 5o47:A, 6s2g:A, 6s2g:B, 6s2h:A, 6s2h:B, 6s3z:A, 6s3z:B, 6s82:A, 6s82:B
5 3afg:B 507 17 0.1493 0.0197 0.5882 0.36 3afg:A
6 7f0d:E 207 40 0.1493 0.0483 0.2500 1.7 7kgb:E, 7msc:E, 7msh:E, 7msm:E, 7msz:E, 7mt2:E, 7mt3:E, 7mt7:E, 7sfr:E, 5v7q:E, 5v93:E
7 6ome:A 499 20 0.1493 0.0200 0.5000 1.7
8 4c2u:A 658 37 0.2090 0.0213 0.3784 2.4 4c2t:A, 4c2t:B, 4c2t:C, 4c2t:D, 4c2u:D, 4c30:I, 4c30:D
9 4c30:F 632 37 0.2090 0.0222 0.3784 2.5 4c30:A
10 1e3d:B 537 32 0.1642 0.0205 0.3438 5.9 1e3d:D
11 4pz0:A 321 22 0.1493 0.0312 0.4545 6.1
12 4a7x:C 234 45 0.2537 0.0726 0.3778 7.4 4a7w:A, 4a7w:B, 4a7x:B, 4a7x:D, 4a7x:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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