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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DFAKLAAAQGDAIDSRYHPSAAVRRQLNKVFPTHWSFLLGEIALYSFIILLLTGVWLTLFFDPSMAHVTYDGVYQPLRGV
QMSRAYETALDISFEVRGGLFVRQVHHWAALMFAASIMVHLARIFFTGAFRRPREANWVIGSLLLILAMFEGFFGYSLPD
DLLSGTGIRAALSGITMGIPVIGTWMHWALFGGDFPGEILIPRLYALHILLIPGIILALIGAHLALVWFQKHTQFPGPGR
TETNVVGVRVMPVFAVKSGAFFAMITGVLGLMGGLLTINPIWNLGPYKPSQVSAGSQPDFYMMWTDGLIRLWPAWEFYPF
GHTIPQGVWVAVGMGLVFALLIAYPFIEKKVTGDDAHHNLLQRPRDVPVRTAIGSMAIALYLLLTFACMNDIIALKFHIS
LNATTWIGRIGMVVLPAIVYFVAYRWAISLQRSDREVLEHGVETGIIKRLPHGAYVELHQPLGPVDEHGHPIPLEYAGAP
LPKRMNKLGSGGAPGTGSFLFPDPAVEHEALTEAAHASEHKSLTALKEHQDRI

The query sequence (length=533) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6hwh:b 536 533 1.0000 0.9944 1.0000 0.0 6adq:B, 6adq:N, 6hwh:Y, 8ovc:H, 8ovc:N, 8ovd:N, 8ovd:H, 7rh5:E, 7rh5:F, 7rh6:F, 7rh6:E, 7rh7:E, 7rh7:F
2 7e1v:N 524 523 0.8255 0.8397 0.8413 0.0 7e1v:B, 7e1w:N, 7e1w:B, 7e1x:N, 7e1x:B, 8hcr:B, 8hcr:N
3 7q21:b 534 525 0.6435 0.6423 0.6533 0.0 7q21:B, 7qhm:B, 7qhm:O, 7qho:B, 7qho:O
4 2e74:A 215 219 0.1144 0.2837 0.2785 6.89e-23 2d2c:A, 2d2c:N, 2e75:A, 2e76:A, 4h0l:A, 4h13:A, 4h44:A, 4i7z:A, 4ogq:A, 4pv1:A, 1vf5:A, 1vf5:N, 2zt9:A
5 7r0w:I 222 216 0.1107 0.2658 0.2731 1.31e-22 7r0w:A, 7zxy:A, 7zxy:I
6 6rqf:I 215 219 0.1144 0.2837 0.2785 2.67e-21 7qrm:I, 7qrm:A, 6rqf:A, 7zyv:I, 7zyv:A
7 1q90:B 212 219 0.1051 0.2642 0.2557 4.72e-20
8 8smr:I 403 357 0.1670 0.2208 0.2493 2.25e-16 8smr:D, 8snh:I, 8snh:D
9 6kls:B 395 237 0.1257 0.1696 0.2827 5.71e-15 6kls:E, 6klv:B, 6klv:E
10 1zrt:C 431 226 0.1013 0.1253 0.2389 1.06e-13 6xi0:C, 6xi0:P, 6xkt:C, 6xkt:P, 6xku:C, 6xku:P, 6xkv:C, 6xkv:P, 6xkw:C, 6xkw:P, 6xkx:C, 6xkx:P, 6xkz:C, 6xkz:P, 1zrt:P
11 8asi:B 433 191 0.0938 0.1155 0.2618 1.73e-13 8asi:F, 8asj:B, 8asj:F, 2fyn:A, 2fyn:D, 2fyn:G, 2fyn:J, 2fyn:M, 2fyn:P, 5kkz:A, 5kkz:E, 5kkz:K, 5kkz:O, 5kli:A, 5kli:E, 5kli:K, 5kli:O, 6nhh:A, 6nhh:E, 6nin:A, 6nin:E, 6nin:K, 6nin:O, 6nin:S, 6nin:W, 2qjk:A, 2qjk:D, 2qjk:G, 2qjk:J, 2qjk:M, 2qjk:P, 2qjp:A, 2qjp:D, 2qjp:G, 2qjp:J, 2qjy:A, 2qjy:D, 2qjy:G, 2qjy:J, 2qjy:M, 2qjy:P, 7tce:A, 7tce:E, 7tce:K, 7tce:O, 7tlj:A, 7tlj:E
12 2yiu:A 428 226 0.1013 0.1262 0.2389 2.12e-13 2yiu:D
13 7rje:K 384 160 0.0901 0.1250 0.3000 5.07e-12 7rja:K, 7rja:T, 7rjb:K, 7rjc:K, 7rjd:K, 7rje:T
14 7jrg:C 388 331 0.1426 0.1959 0.2296 1.29e-10 8bel:C, 8bel:M, 8bpx:AC, 8bpx:BC, 8bq5:AC, 8bq5:BC, 8bq6:AC, 8bq6:BC, 8e73:C, 8e73:O, 7jrg:O, 7jrp:C, 7jrp:O
15 8q1b:C 387 160 0.0826 0.1137 0.2750 1.93e-10 8q1b:N
16 1be3:C 379 224 0.1107 0.1557 0.2634 1.64e-09 2a06:C, 2a06:P, 1bgy:C, 1bgy:O, 4d6t:C, 4d6t:P, 4d6u:C, 4d6u:P, 7dgq:m, 7dgq:y, 7dgr:m, 7dgr:y, 7dgs:m, 7dgs:y, 7dkf:C1, 7dkf:O1, 6fo0:P, 6fo0:C, 6fo2:P, 6fo2:C, 6fo6:C, 6fo6:P, 2fyu:C, 5gpn:C, 5gpn:O, 5gup:w, 5gup:7, 6haw:C, 8iog:A, 8iog:a, 5j4z:AC, 5j4z:AN, 5j7y:AC, 5j7y:AN, 5j8k:AC, 5j8k:AN, 5klv:C, 1l0l:C, 1l0n:C, 5luf:b, 5luf:o, 6nhg:C, 5nmi:C, 5nmi:P, 1ntk:C, 1ntm:C, 1ntz:C, 1nu1:C, 5okd:C, 8p65:C, 8p65:P, 1pp9:C, 1pp9:P, 1ppj:C, 1ppj:P, 6q9e:b1, 6q9e:b2, 6qbx:b1, 6qbx:b2, 1qcr:C, 6qc2:b1, 6qc2:b2, 6qc3:b1, 6qc3:b2, 6qc4:b1, 6qc4:b2, 7r3v:C, 1sqb:C, 1sqp:C, 1sqq:C, 1sqv:C, 1sqx:C, 7tay:C, 7tz6:C, 7tz6:P, 8ugd:3C, 8ugd:3P, 8uge:3C, 8uge:3P, 8ugf:3C, 8ugf:3P, 8ugg:3C, 8ugg:3P, 8ugh:3C, 8ugh:3P, 8ugi:3C, 8ugi:3P, 8ugj:3C, 8ugj:3P, 8ugk:3C, 8ugk:3P, 8ugn:3C, 8ugn:3P, 8ugr:3C, 8ugr:3P, 8ugr:6C, 8ugr:6P, 6xvf:C, 2ybb:C, 2ybb:c, 6zfs:C, 6zft:C, 6zfu:C
17 7o37:C 380 237 0.1144 0.1605 0.2574 2.90e-09 8iao:AC, 8iao:Ac, 8iar:AC, 8iar:Ac, 8ib4:AC, 8ib4:Ac, 8ib7:AC, 8ib7:Ac, 8ib9:AC, 8ib9:Ac, 8ibc:AC, 8ibc:Ac, 8ibd:AC, 8ibd:Ac, 8ibg:AC, 8ibg:Ac, 8ic2:AC, 8ic2:Ac, 8ic5:AC, 8ic5:Ac, 7o37:N, 7o3c:C, 7o3c:N, 7o3e:C, 7o3e:N, 7o3h:C, 7o3h:N, 8pw5:C, 8pw5:N, 8pw6:C, 8pw6:N, 8pw7:C, 8pw7:N
18 5xte:J 378 177 0.0919 0.1296 0.2768 2.59e-08 5xte:V, 5xth:AJ, 5xth:AV, 5xti:AJ, 5xti:AV
19 3cx5:C 385 294 0.1276 0.1766 0.2313 3.42e-08 3cx5:N, 3cxh:C, 3cxh:N, 8e7s:J, 8e7s:j, 8ec0:J, 8ec0:j, 1ezv:C, 6giq:C, 6giq:N, 6hu9:C, 6hu9:N, 2ibz:C, 1kb9:C, 1kyo:C, 1kyo:N, 1p84:C, 4pd4:C, 6t0b:C, 6t0b:N, 6t15:C, 6t15:N, 6ymx:C, 6ymx:N
20 8ab6:C 383 177 0.0901 0.1253 0.2712 3.78e-08 8ab6:N, 8ab7:C, 8ab7:N, 8ab8:C, 8ab8:N, 8ab9:C, 8ab9:N, 8aba:C, 8aba:N, 8abb:C, 8abb:N, 8abe:C, 8abe:N, 8abf:C, 8abf:N, 8abg:C, 8abg:N, 8abh:C, 8abh:N, 8abi:C, 8abi:N, 8abj:C, 8abj:N, 8abk:C, 8abk:N, 8abl:C, 8abl:N, 8abm:C, 8abm:N, 8ac3:C, 8ac3:N, 8ac4:C, 8ac4:N, 8ac5:C, 8ac5:N
21 3cwb:C 380 130 0.0732 0.1026 0.3000 1.40e-05 1bcc:C, 2bcc:C, 3bcc:C, 3cwb:P, 3h1h:C, 3h1h:P, 3h1i:C, 3h1i:P, 3h1j:C, 3h1j:P, 3h1k:C, 3h1k:P, 3h1l:C, 3h1l:P, 3l70:C, 3l70:P, 3l71:C, 3l71:P, 3l72:C, 3l72:P, 3l73:C, 3l73:P, 3l74:C, 3l74:P, 3l75:C, 3l75:P, 3tgu:C, 3tgu:P, 4u3f:C, 4u3f:P
22 8iuf:QC 364 144 0.0619 0.0907 0.2292 0.070 8iuf:Qc, 8iuj:QC, 8iuj:Qc
23 6kwy:c 1811 89 0.0507 0.0149 0.3034 2.8 8cvs:c, 6kwx:A, 7naq:c

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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