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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DEVTPNHVAIIIDGHRKWAKSRGVTVQEGHQTGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFL
RSDVKELVTSQQDIQFSAIGDKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEHGILRPDD
IDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYRCRYRGFGE

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hc8:A 236 236 1.0000 1.0000 1.0000 2.08e-179 5hc7:A
2 8kgb:C 245 233 0.4492 0.4327 0.4549 6.73e-74 8kgb:A, 8kgb:B, 8kgb:D, 8x35:A, 8x35:B, 8x36:A, 8x36:B, 8x37:A, 8x37:B
3 5hxq:C 227 230 0.4237 0.4405 0.4348 2.19e-67 5hxp:A, 5hxp:C, 5hxq:A, 5hxt:A, 5hxt:B
4 7jlr:A 237 231 0.4364 0.4346 0.4459 1.04e-60 7jlj:A, 7jlm:A, 7jlm:B
5 4u82:A 236 231 0.3729 0.3729 0.3810 3.32e-57 4h8e:A, 3wyi:A
6 1x07:A 231 224 0.3941 0.4026 0.4152 1.17e-55 5cqj:A, 2e98:A, 2e98:B, 2e99:A, 2e99:B, 2e9a:A, 2e9a:B, 2e9c:A, 2e9c:B, 2e9d:A, 2e9d:B, 4h2j:A, 4h2j:B, 4h2m:A, 4h2m:B, 4h2o:B, 4h2o:A, 4h38:A, 4h3a:A, 4h3a:B, 4h3c:A, 4h3c:B, 1jp3:A, 3sgt:B, 3sgv:B, 3sgv:A, 3sgx:A, 3sh0:B, 3sh0:A, 3th8:B, 1ueh:A, 1ueh:B, 1v7u:A, 3wyj:A, 1x06:A, 1x08:A, 1x09:A
7 4q9o:A 240 232 0.3729 0.3667 0.3793 1.90e-48 5kh4:A, 5kh4:B, 5kh5:B, 4q9m:A, 4q9m:B, 4q9o:B
8 6ime:A 285 231 0.3814 0.3158 0.3896 1.44e-46 6ime:B, 4onc:A, 4onc:B, 2vg2:A, 2vg2:C, 2vg2:B, 2vg2:D, 2vg3:A, 2vg3:C, 2vg3:B, 2vg3:D
9 6szg:A 222 211 0.3347 0.3559 0.3744 5.04e-46 6szg:B, 6szh:B
10 5zhe:B 200 221 0.3517 0.4150 0.3756 6.90e-43
11 7pay:A 329 229 0.3517 0.2523 0.3624 1.25e-41 7pax:A, 7pb0:A, 7pb1:A, 6w2l:A, 6z1n:A
12 2vg1:A 228 231 0.3220 0.3333 0.3290 4.49e-34 2vg0:A, 2vg0:B, 2vg1:B
13 3ugs:B 208 231 0.2669 0.3029 0.2727 3.67e-29 3ugs:A
14 5ygk:C 217 238 0.2754 0.2995 0.2731 3.17e-18 5gul:A, 5gul:B, 5gul:C, 5gul:D, 5ygk:A, 5ygk:B, 5ygk:H, 5ygk:D, 5ygk:E, 5ygk:F, 5ygk:G
15 7vqb:A 207 226 0.2500 0.2850 0.2611 9.28e-16 7vq9:A, 7vq9:B, 7vqa:A, 7vqa:B, 7vqb:B, 7vqc:B, 7vqd:A, 7vqd:B
16 7cav:B 222 226 0.2288 0.2432 0.2389 4.24e-15 7caq:A, 7caq:B, 7car:A, 7car:B, 7cas:B, 7cav:A, 7cav:C, 7cav:D, 7cav:E, 7cav:F, 7cav:G, 7cav:H, 7cc3:A, 7cc3:B, 7cc3:C, 7cc3:D, 7cc3:E, 7cc3:F, 7cc3:G, 7cc3:H
17 5xk6:A 218 233 0.2288 0.2477 0.2318 9.52e-15 5xk6:B, 5xk6:C, 5xk6:D, 5xk7:A, 5xk7:B, 5xk7:C, 5xk7:D, 5xk8:A, 5xk8:B, 5xk8:C, 5xk8:D, 5xk9:A, 5xk9:B, 5xk9:C, 5xk9:D, 5xk9:E, 5xk9:F, 5xk9:G, 5xk9:H
18 6w2l:B 195 98 0.1229 0.1487 0.2959 5.05e-04 7pb1:B
19 5w8q:A 379 93 0.1144 0.0712 0.2903 0.31 5w8q:B, 5wc4:A, 5wc4:B
20 4lk8:B 105 67 0.0975 0.2190 0.3433 0.34 4lp1:B
21 7whg:G 221 54 0.0678 0.0724 0.2963 0.60
22 2zgi:D 246 25 0.0466 0.0447 0.4400 0.69 2zgi:A, 2zgi:B, 2zgi:C
23 2eig:A 230 82 0.1017 0.1043 0.2927 2.6 2eig:B, 2eig:C, 2eig:D
24 5b50:A 324 37 0.0593 0.0432 0.3784 3.1 5az3:A, 5b4z:A, 5b51:A
25 4m2j:A 382 62 0.0720 0.0445 0.2742 4.8 4m2k:A, 4m2m:A
26 8gix:E 991 163 0.1483 0.0353 0.2147 7.2
27 6j6g:A 1913 44 0.0636 0.0078 0.3409 8.6 5gmk:A, 6j6h:A, 6j6n:A, 6j6q:A, 5y88:A
28 4fyp:A 228 38 0.0593 0.0614 0.3684 8.7 4fyp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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