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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLD
SVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAEATEKWLR
GVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFAGGTHVNISGAAVAAHAP
NKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASELVDKVGFDN

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2owt:A 315 314 1.0000 0.9968 1.0000 0.0 2ows:A
2 1si0:A 316 317 0.4968 0.4937 0.4921 1.51e-106 1si1:A
3 3f11:A 316 316 0.4204 0.4177 0.4177 6.35e-77 2pt2:A
4 6g7n:A 318 314 0.4236 0.4182 0.4236 1.75e-76 6g7n:B, 6g7p:B, 6g7p:A
5 3e13:X 317 316 0.3567 0.3533 0.3544 4.45e-70 1y4t:A, 1y4t:D
6 7li0:A 312 316 0.3885 0.3910 0.3861 9.50e-70 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
7 2vp1:A 313 315 0.3726 0.3738 0.3714 1.78e-66 2vp1:B
8 8c4y:AAA 312 318 0.3408 0.3429 0.3365 2.30e-56 8oei:A, 8oem:A, 8oen:A, 8ogg:A, 8rk1:A
9 8j4h:A 309 301 0.2739 0.2783 0.2857 7.07e-24 8j4j:A
10 6ivy:B 307 291 0.2834 0.2899 0.3058 1.06e-23 6ivy:A, 6j2s:A, 6j2s:B
11 4elq:A 310 285 0.2739 0.2774 0.3018 1.86e-21 4elp:A, 4elp:B, 4elp:C, 4elp:D, 4elq:B, 4elr:A, 4elr:B, 3wae:A, 3wae:B
12 1d9v:A 309 323 0.2994 0.3042 0.2910 2.81e-21 3kn7:A, 3kn8:A, 1mrp:A, 1nnf:A, 2o68:A, 3od7:A, 3odb:A
13 8k7n:A 307 276 0.2516 0.2573 0.2862 7.19e-21
14 1d9y:A 309 329 0.2834 0.2880 0.2705 1.48e-17 1o7t:A, 1o7t:B, 1o7t:C, 1o7t:D, 1o7t:E, 1o7t:F, 1o7t:G, 1o7t:H, 1o7t:I, 1r1n:A, 1r1n:B, 1r1n:C, 1r1n:D, 1r1n:E, 1r1n:F, 1r1n:G, 1r1n:H, 1r1n:I, 1xc1:A, 1xc1:B, 1xc1:C, 1xc1:D, 1xc1:E, 1xc1:F, 1xc1:G, 1xc1:H, 1xc1:I
15 1xvx:A 311 319 0.2771 0.2797 0.2727 7.10e-16
16 6wce:A 314 305 0.2261 0.2261 0.2328 7.93e-06
17 6lkg:A 294 277 0.2134 0.2279 0.2419 9.39e-05 6lkg:C, 6lkh:A, 6lkh:B, 6lkj:A, 6lkk:A
18 2qry:C 318 314 0.2420 0.2390 0.2420 0.005 2qry:A, 2qry:B, 2qry:D
19 4r73:A 321 246 0.1624 0.1589 0.2073 1.4 4r73:B, 4r74:A, 4r74:B, 4r74:C, 4r74:D, 4r75:A
20 1hqm:D 1175 24 0.0350 0.0094 0.4583 3.4 1i6v:D
21 6ffl:A 383 39 0.0510 0.0418 0.4103 4.1
22 3cg1:A 293 39 0.0350 0.0375 0.2821 4.2 3cg1:B
23 5ndx:A 606 85 0.0892 0.0462 0.3294 4.2
24 6os6:A 362 41 0.0510 0.0442 0.3902 8.7 6os5:A, 6os5:B, 6os5:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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