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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCW
QNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLS
MLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHL
TAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKDKVDHIIDIC
FLKNEKFINAMKEAFETFINKRPN

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a0l:E 709 344 0.9942 0.4824 0.9942 0.0 4a0l:H, 8ei1:A, 8ei1:B, 8ei1:C, 8ei1:D
2 4a0k:A 719 343 0.8023 0.3839 0.8047 0.0 7opc:e, 7opd:e
3 7zbw:C 709 361 0.2820 0.1368 0.2687 6.18e-29 8cdj:C
4 7shl:A 645 375 0.2384 0.1271 0.2187 8.24e-20
5 8ei2:A 358 334 0.2267 0.2179 0.2335 1.83e-17
6 8je1:A 675 369 0.2297 0.1170 0.2141 8.54e-17
7 3uq3:A 258 156 0.1250 0.1667 0.2756 0.032 3upv:A
8 5ayr:A 224 87 0.0698 0.1071 0.2759 0.39 5ayr:C, 1emh:A, 1emj:A, 3fcf:A, 3fci:A, 3fck:B, 3fcl:A, 3fcl:B, 2hxm:A, 2oxm:A, 2oyt:A, 1q3f:A, 4skn:E, 1ssp:E, 2ssp:E, 6vba:A
9 5z66:A 512 90 0.0756 0.0508 0.2889 5.1
10 5kow:A 474 92 0.0756 0.0549 0.2826 5.7 6c7s:A, 5kox:A
11 4c4a:A 641 33 0.0320 0.0172 0.3333 6.3 6ogn:A
12 4xww:A 545 164 0.1047 0.0661 0.2195 7.3 4xwt:A, 4xwt:B, 4xww:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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