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BioLiP
>protein
DEPKTDKDVKKLGQDDAGYTIGEEFKWFLKSTIPANLGDYEKFEITDKFADGLTYKSVGKIKIGSKTLNRDEHYTIDEPT
VDNQNTLKITFKPEKFKEIAELLKGMTLVKNQDALDKATANTDDAAFLEIPVASTINEKAVLGKAIENTFELQYDHTPDK
ADNPKPSNPPRKPEVHTGGKRFVKKDSTETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHT
DGTFEIKGLAYAVDANAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTSYNTKPTDITVDSADATPDTIKNNKR

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pf2:A 317 315 1.0000 0.9937 1.0000 0.0 3pg2:A, 3pg2:B
2 4hss:A 411 318 0.2857 0.2190 0.2830 3.09e-07 4hsq:A, 4hss:B
3 6m48:A 813 100 0.1048 0.0406 0.3300 0.002 6m3y:A, 6m48:B
4 3kpt:B 355 140 0.1206 0.1070 0.2714 0.004
5 3kpt:B 355 297 0.2095 0.1859 0.2222 2.4
6 3qdh:A 271 96 0.0984 0.1144 0.3229 0.052
7 5fgs:D 123 106 0.0984 0.2520 0.2925 0.20
8 1gwe:A 498 145 0.1238 0.0783 0.2690 0.51 1gwf:A, 1gwh:A, 1hbz:A
9 3fol:A 274 141 0.1111 0.1277 0.2482 1.2 3fom:A, 3fon:A, 3fon:C
10 6cz7:A 814 58 0.0508 0.0197 0.2759 2.7 6cz7:C, 6cz8:C, 6cz8:A, 6cz9:A, 6cz9:C, 6cza:A, 6cza:C
11 8dsh:B 473 102 0.0921 0.0613 0.2843 3.3 6atb:A, 6atb:B, 6atb:C, 6atb:D, 6azj:A, 6azj:B, 6b75:A, 6b75:B, 6b75:D, 6b76:A, 6b76:B, 6b76:C, 6b76:D, 3dgr:A, 3dgr:B, 3dhd:A, 3dhd:B, 3dhf:A, 3dhf:B, 3dkj:A, 3dkj:B, 3dkl:A, 3dkl:B, 8dsc:A, 8dsc:B, 8dsd:A, 8dsd:B, 8dse:A, 8dse:B, 8dsh:A, 8dsi:A, 8dsi:B, 8dsm:A, 8dsm:B, 8dsm:C, 8dsm:D, 8dtj:A, 8dtj:B, 2e5c:A, 2e5c:B, 2e5d:A, 2e5d:B, 6e68:A, 6e68:B, 7enq:A, 7enq:B, 7enq:C, 7enq:D, 8f7l:A, 8f7l:B, 3g8e:A, 3g8e:B, 2g96:A, 2g96:B, 2g97:A, 2g97:B, 2gvg:A, 2gvg:C, 2gvg:B, 2gvg:D, 2gvg:E, 2gvg:F, 2gvj:A, 2gvj:B, 2h3d:A, 2h3d:B, 8ivu:A, 8ivu:B, 8ivu:C, 8ivu:D, 4jnm:A, 4jnm:B, 4jr5:A, 4jr5:B, 4kfn:A, 4kfn:B, 4kfo:A, 4kfo:B, 4kfp:A, 4kfp:B, 5kit:A, 5kit:B, 4l4l:A, 4l4l:B, 4l4m:A, 4l4m:B, 4lts:A, 4lts:B, 4lv9:A, 4lv9:B, 4lva:A, 4lva:B, 4lvb:A, 4lvb:B, 4lvd:B, 4lvd:A, 4lvf:A, 4lvf:B, 4lvg:A, 4lvg:B, 4lww:A, 4lww:B, 5lx3:A, 5lx3:B, 5lx5:A, 5lx5:B, 4m6p:A, 4m6p:B, 4m6q:A, 4m6q:B, 4n9b:A, 4n9b:B, 4n9c:A, 4n9c:B, 4n9d:A, 4n9d:B, 4n9e:A, 4n9e:B, 5nsd:A, 5nsd:B, 4o0z:A, 4o0z:B, 4o10:A, 4o10:B, 4o12:A, 4o12:B, 4o13:A, 4o13:B, 4o14:A, 4o14:B, 4o15:A, 4o15:B, 4o16:A, 4o17:A, 4o17:B, 4o18:A, 4o18:B, 4o19:A, 4o19:B, 4o1a:A, 4o1a:B, 4o1b:A, 4o1b:B, 4o1c:A, 4o1c:B, 4o1d:A, 4o1d:B, 4o28:A, 4o28:B, 6peb:A, 6peb:B, 6peb:C, 7ppe:A, 7ppe:B, 7ppf:A, 7ppf:B, 7ppg:A, 7ppg:B, 7ppg:C, 7ppg:D, 7pph:A, 7pph:B, 7ppi:A, 7ppi:B, 7ppi:C, 7ppi:D, 7q8t:A, 7q8t:B, 6ta0:A, 6ta0:B, 6ta2:B, 6ta2:A, 6tac:A, 6tac:B, 8tm7:A, 8tm7:B, 5u2m:A, 5u2m:B, 5u2n:A, 5u2n:B, 5upe:A, 5upe:B, 5upf:A, 5upf:B, 5wi0:A, 5wi0:B, 5wi1:A, 5wi1:B, 4wq6:A, 4wq6:B
12 7v3x:V 437 51 0.0508 0.0366 0.3137 4.1 7v3x:U
13 2y88:A 244 26 0.0444 0.0574 0.5385 7.6 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
14 4pet:A 329 25 0.0317 0.0304 0.4000 7.8 4pet:B
15 9jd2:A 273 60 0.0508 0.0586 0.2667 9.7 9jhv:A, 1wta:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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