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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEA
MLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQ
SLSLLYNVPAVAEEIQDEVDELLQ

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5buo:A 185 183 0.9946 0.9892 1.0000 7.53e-132 3umi:A, 3umk:A
2 3q7g:A 203 181 0.5054 0.4581 0.5138 3.15e-60 3pmr:A, 3pmr:B, 3q7g:B, 3q7l:A, 3q7l:B, 3qmk:A, 3qmk:B, 4rda:A, 4rda:B
3 3k6b:A 217 177 0.3750 0.3180 0.3898 3.56e-29
4 8tfo:A 390 57 0.0815 0.0385 0.2632 0.78 8tfo:B
5 4qxd:B 289 68 0.0924 0.0588 0.2500 0.81 4qxd:A
6 3kta:B 171 96 0.1196 0.1287 0.2292 2.7
7 3g4f:A 515 87 0.1141 0.0408 0.2414 3.3 3g4f:B
8 4v6w:CG 241 45 0.0707 0.0539 0.2889 4.9 6xu6:CG, 6xu7:CG, 6xu8:CG
9 3rim:A 694 26 0.0598 0.0159 0.4231 6.0 3rim:C, 3rim:B, 3rim:D
10 6kik:A 275 65 0.0761 0.0509 0.2154 7.9 5dan:A, 6kiy:A, 6ky6:A, 6ky6:B
11 1fo2:A 456 73 0.1196 0.0482 0.3014 8.1 1fo3:A, 5kij:A, 5kk7:A, 5kk7:B, 1x9d:A
12 5dhi:A 536 59 0.0870 0.0299 0.2712 8.3 5dhk:A, 4di5:A, 5eas:A, 5eat:A, 5eau:A, 1hx9:A, 1hxa:A, 1hxc:A, 1hxg:A, 5ik0:A, 5ik6:A, 5ik9:A, 5ika:A, 5ikh:A, 5il3:A, 5il8:A, 5ild:A, 5ilh:A, 5ili:A, 5ily:A, 3lz9:A, 3m00:A, 3m01:A, 3m02:A, 4rnq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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