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BioLiP
>protein
DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYDGKYELLTSANEVI
VEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILI
DACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVC
LSIFCNFSPICTTCETAFKIS

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bvw:5 263 263 0.9923 0.9848 0.9848 0.0 7ad8:E, 8byq:5, 8ebs:F, 8ebt:F, 8ebu:F, 8ebv:F, 8ebw:F, 8ebx:F, 8eby:F, 7egb:3, 7egc:3, 7enc:3, 8gxq:HE, 8gxs:HE, 7lbm:b, 6nmi:F, 7nvr:4, 7nvw:4, 7nvx:4, 7nvy:4, 7nvz:4, 7nw0:4, 6ro4:E, 8wak:3, 8wal:3, 8wan:3, 8wao:3, 8wap:3, 8waq:3, 8war:3, 8was:3
2 7ena:3 295 287 1.0000 0.8847 0.9094 0.0 6o9l:4, 6o9m:4
3 7zsb:4 306 290 0.3218 0.2745 0.2897 3.27e-36 8cen:4, 8ceo:4, 7k01:4, 7k04:4, 7m2u:4, 7o4i:4, 7o4j:4, 7o4k:4, 7o4l:4, 7o72:4, 7o73:4, 7o75:4, 7zs9:4, 7zsa:4
4 5oqj:4 297 285 0.3027 0.2660 0.2772 6.05e-31 7ml0:4, 7ml1:4, 7ml2:4, 7ml3:4, 7ml4:4, 5oqm:4
5 8cen:6 383 47 0.0536 0.0366 0.2979 0.11 8ceo:6, 7k01:6, 7k04:6, 7m2u:6, 7ml0:6, 7ml1:6, 7ml2:6, 7ml3:6, 7ml4:6, 7o4i:6, 7o4j:6, 7o4k:6, 7o4l:6, 7o72:6, 7o73:6, 7o75:6, 7zs9:6, 7zsa:6, 7zsb:6
6 6gym:6 335 43 0.0536 0.0418 0.3256 0.35 5oqj:6, 5oqm:6
7 6y8y:A 572 43 0.0575 0.0262 0.3488 0.45 6y8x:AA, 6y8z:A
8 3r7d:A 291 41 0.0613 0.0550 0.3902 3.7 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
9 3o05:A 261 77 0.0766 0.0766 0.2597 5.1 3o05:B, 3o05:C
10 6sno:A 573 26 0.0460 0.0209 0.4615 9.2 1c47:A, 1c4g:A, 5epc:A, 5epc:B, 5f9c:A, 5jn5:A, 5jn5:B, 3pmg:A, 3pmg:B, 7s0w:A, 6snp:A, 6snq:A, 5tr2:A, 5tr2:B, 6uiq:B, 6uiq:A, 6uo6:A, 6uo6:B, 5vbi:A, 5vbi:B, 5vec:A, 5vec:B, 5vg7:A, 5vg7:B, 5vin:A, 5vin:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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