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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DEEFKFLATEAKMLITAAERLAGTDPELQEMVALIKKELEQAERTFRNGDKSEAQRQLEFVLTAARAVMNVAAAANAAGT
DPELIEMVLRILKQLKEAIRTFQNGDQEEAETQLRFVLRAAIAVAVVAAALVLAGTDPELQEMVKQILEELKQAIETFAR
GDKEKALTQLLFVAWAAHAVAMIAAAANLAGTDPRLQQQVKEILEKLKEAIETFQKGDEEQAFRQLAEVLAEAALVALRA
AL

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7uni:B 245 242 1.0000 0.9878 1.0000 2.98e-167 7uni:A, 7uni:C, 7uni:D
2 7ue2:A 304 218 0.2769 0.2204 0.3073 0.33
3 2f1k:A 279 51 0.0702 0.0609 0.3333 0.52 2f1k:B, 2f1k:C, 2f1k:D
4 4arz:A 291 109 0.1074 0.0893 0.2385 4.6 6jwp:A, 6jwp:F, 3r7w:A, 3r7w:C
5 7q4g:C 231 48 0.0702 0.0736 0.3542 5.0 7q4f:A, 7q4f:B, 7q4f:C, 7q4f:D, 7q4f:E, 7q4g:A, 7q4g:B, 7q4g:D, 7q4g:E, 6xub:A, 6xub:B, 6xub:C, 6xub:D, 6xub:E, 6xuc:A, 6xuc:B, 6xuc:C, 6xuc:D, 6xuc:E
6 7khs:C 427 45 0.0579 0.0328 0.3111 9.7
7 8fit:A 229 113 0.1529 0.1616 0.3274 9.7 8fit:C
8 2m0u:A 117 53 0.0826 0.1709 0.3774 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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