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BioLiP
>protein
DDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVAASTGMDLLLMDDFKLV
INDLTYHVRPPKRDL

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6k7x:C 276 95 0.9789 0.3370 0.9789 1.88e-63 6k7x:A, 6k7x:B, 6k7x:D, 6k7x:K, 6k7x:L, 6k7x:M, 6k7x:N, 6k7y:A, 6k7y:B, 6k7y:C, 6k7y:D, 6k7y:N, 6k7y:O, 6k7y:P, 6k7y:Q, 5kue:A
2 8bwy:C 4264 54 0.1789 0.0040 0.3148 2.0
3 6zyw:C 4433 54 0.1789 0.0038 0.3148 2.1
4 8bx8:A 4453 54 0.1789 0.0038 0.3148 2.1 7k58:A, 7k5b:A, 7kek:A
5 7moq:C 4159 54 0.1789 0.0041 0.3148 2.2 6zyy:C
6 6l6r:A 610 28 0.1053 0.0164 0.3571 3.6 6l6r:B, 7nam:A, 3sob:B, 3soq:A, 3sov:A
7 6xyw:Bg 128 43 0.1579 0.1172 0.3488 3.6
8 8cwr:A 85 30 0.1263 0.1412 0.4000 5.9 8cwt:A, 8cwt:C, 8cwt:E, 8cyf:A
9 5jbd:B 855 38 0.1368 0.0152 0.3421 7.9 5jbd:A, 5jbe:A, 5jbe:B, 5jbf:A, 5jbf:B
10 6xu2:A 1091 18 0.1263 0.0110 0.6667 8.2 6xte:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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