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BioLiP
>protein
DDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATKYTTFKAGPILELEQWIDKYTSQLPPLT
AFILPSGGKISSALHFCRAVCRRAKRRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYM

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rut:E 187 154 0.9735 0.7861 0.9545 2.64e-105 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
2 3ci1:A 188 157 0.3974 0.3191 0.3822 1.53e-30 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
3 3ke5:A 182 144 0.3841 0.3187 0.4028 5.49e-26 3ke5:C, 3ke5:B
4 2zhz:B 174 152 0.3642 0.3161 0.3618 7.49e-25 2zhz:A, 2zhz:C
5 8d32:A 186 114 0.3046 0.2473 0.4035 9.66e-18 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 8h0s:C 190 132 0.2185 0.1737 0.2500 1.5 8h0s:A, 8h0t:A, 4poo:A
7 8tvy:M 558 61 0.1060 0.0287 0.2623 1.5 5vvr:M
8 8h0s:B 171 77 0.1457 0.1287 0.2857 1.8 8h0s:D, 4poo:B
9 6rxs:A 218 51 0.1126 0.0780 0.3333 3.0
10 6rxj:A 235 51 0.1126 0.0723 0.3333 3.4 6rxj:B, 6rxk:A, 6rxl:A, 6rxm:A, 6rxm:B, 6rxm:C, 6rxm:D, 6rxm:E, 6rxm:F, 6rxo:A, 6rxo:B, 6rxp:A, 6rxp:B, 6rxq:A, 6rxq:B, 6rxq:C, 6rxq:D, 6rxr:A, 6rxr:B, 6rxr:C, 6rxr:D, 1s5p:A
11 8joz:A 257 55 0.1126 0.0661 0.3091 4.2 4htf:A, 4htf:B
12 7n6e:I 199 64 0.0993 0.0754 0.2344 6.1 7n6e:G, 7pbe:D, 7pbe:I, 3sjv:D, 3sjv:I, 3sjv:N, 3sjv:S, 8ye4:G, 8ye4:I
13 2eo5:A 412 34 0.0861 0.0316 0.3824 6.3
14 7ae6:A 147 97 0.1987 0.2041 0.3093 7.2 7ae6:B, 7ae9:B, 7ae9:A
15 5aj3:b 135 37 0.0861 0.0963 0.3514 9.6 5aj4:Ab, 6gaw:Ab, 6gaz:Ab, 3jd5:b, 6neq:b, 6nf8:b, 7nqh:Ab, 7nql:Ab, 7nsi:Ab, 7nsj:Ab, 8oin:AS, 8oip:AS, 6ydp:Ab, 6ydw:Ab

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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