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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATKYFKAGPILELEQWIDKYTSQLPPLTAF
ILPSGGKISSALHFCRAVCCRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIY

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7rut:E 187 153 0.9865 0.7807 0.9542 9.00e-105 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
2 3ci1:A 188 157 0.3986 0.3138 0.3758 1.13e-30 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
3 3ke5:A 182 144 0.3919 0.3187 0.4028 9.27e-25 3ke5:C, 3ke5:B
4 2zhz:B 174 152 0.3784 0.3218 0.3684 1.10e-23 2zhz:A, 2zhz:C
5 8d32:A 186 118 0.3176 0.2527 0.3983 2.20e-16 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 6rxs:A 218 56 0.1284 0.0872 0.3393 0.96
7 6rxj:A 235 56 0.1284 0.0809 0.3393 1.1 6rxj:B, 6rxk:A, 6rxl:A, 6rxm:A, 6rxm:B, 6rxm:C, 6rxm:D, 6rxm:E, 6rxm:F, 6rxo:A, 6rxo:B, 6rxp:A, 6rxp:B, 6rxq:A, 6rxq:B, 6rxq:C, 6rxq:D, 6rxr:A, 6rxr:B, 6rxr:C, 6rxr:D, 1s5p:A
8 8h0s:C 190 133 0.2230 0.1737 0.2481 3.3 8h0s:A, 8h0t:A, 4poo:A
9 3b55:A 408 60 0.1419 0.0515 0.3500 3.7
10 7kq8:A 294 66 0.1216 0.0612 0.2727 4.0 7kq8:B, 7kq8:C, 7kq8:D, 7l5c:A, 7l5c:B, 7l5c:C, 7m8h:A, 7m8h:B, 7m8h:C, 7m8h:D
11 8h0s:B 171 78 0.1486 0.1287 0.2821 7.3 8h0s:D, 4poo:B
12 2eo5:A 412 33 0.0878 0.0316 0.3939 8.8
13 3wqy:A 905 85 0.1622 0.0265 0.2824 8.9 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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