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BioLiP
>protein
DDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATFKAGPILELEQWIDKYTSQLPPLTAFIL
PSGGKISSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMK

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rut:E 187 155 0.9932 0.7861 0.9484 7.64e-105 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
2 3ci1:A 188 157 0.4122 0.3245 0.3885 7.35e-31 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
3 3ke5:A 182 144 0.3986 0.3242 0.4097 1.91e-26 3ke5:C, 3ke5:B
4 2zhz:B 174 152 0.3851 0.3276 0.3750 4.00e-25 2zhz:A, 2zhz:C
5 8d32:A 186 122 0.3243 0.2581 0.3934 2.15e-17 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 8h0s:C 190 126 0.2027 0.1579 0.2381 4.8 8h0s:A, 8h0t:A, 4poo:A
7 7n6e:I 199 64 0.1014 0.0754 0.2344 5.3 7n6e:G, 7pbe:D, 7pbe:I, 3sjv:D, 3sjv:I, 3sjv:N, 3sjv:S, 8ye4:G, 8ye4:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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