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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVK
EVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQ

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jfi:B 135 135 1.0000 1.0000 1.0000 3.11e-96
2 4awl:B 92 85 0.2444 0.3587 0.3882 2.86e-17 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
3 4wzs:B 113 121 0.3185 0.3805 0.3554 3.44e-16
4 6r2v:B 93 84 0.2148 0.3118 0.3452 1.02e-15 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
5 7c9o:B 85 83 0.2000 0.3176 0.3253 8.10e-15
6 7aw7:B 92 83 0.2296 0.3370 0.3735 5.24e-14 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
7 7r5s:W 88 61 0.1259 0.1932 0.2787 0.034 7ywx:W
8 1a7w:A 68 61 0.1407 0.2794 0.3115 0.035 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
9 3u52:D 328 64 0.1111 0.0457 0.2344 0.069 3u52:C
10 4lgd:A 350 48 0.1407 0.0543 0.3958 0.53 8a5j:A, 8a66:A, 8a66:B, 6ao5:A, 5dh3:A, 5dh3:B, 4lgd:B, 4lgd:C, 4lgd:D, 8pav:A, 8pav:B, 8paw:A, 8paw:B, 6yat:A, 6yat:B
11 6yuf:C 456 50 0.1407 0.0417 0.3800 1.3
12 5mko:A 308 62 0.1333 0.0584 0.2903 4.2 5mko:B, 5mkp:A, 5mkq:A, 5mkq:B, 3vrh:A
13 6bxi:A 333 53 0.1259 0.0511 0.3208 4.3 6bxi:B
14 7d69:C 95 68 0.1259 0.1789 0.2500 7.0 7d69:G
15 8des:A 475 37 0.1037 0.0295 0.3784 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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