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BioLiP
>protein
DDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHIH
NKVNEYLKKDIYDCATILEDYDCGCS

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jra:A 106 106 1.0000 1.0000 1.0000 9.53e-78 1jr8:A, 1jr8:B, 1jra:B, 1jra:C, 1jra:D
2 1oqc:A 112 100 0.3585 0.3393 0.3800 1.72e-25 1oqc:B, 1oqc:C, 1oqc:D, 3r7c:A, 3r7c:B, 3r7c:C, 3r7c:D
3 2hj3:A 101 94 0.3019 0.3168 0.3404 6.04e-24 2hj3:B
4 3tk0:A 126 100 0.3679 0.3095 0.3900 1.25e-23 4ldk:A, 3mbg:A, 3mbg:B, 3mbg:C, 3o55:A, 3u2l:A, 3u2m:A, 3u5s:A
5 4e0i:A 152 89 0.2830 0.1974 0.3371 8.24e-19 4e0h:A, 4e0i:B, 4e0i:C, 3w4y:A, 3w4y:B, 3w4y:C
6 3gwl:A 106 83 0.2170 0.2170 0.2771 1.89e-06 3gwl:B
7 3td7:A 253 92 0.1981 0.0830 0.2283 7.12e-04 3gwn:A, 3gwn:B
8 3lli:A 251 71 0.1981 0.0837 0.2958 0.030 3llk:A, 3llk:B, 3llk:C
9 3t58:B 504 81 0.2075 0.0437 0.2716 0.74 4p2l:A, 4p2l:B, 3t58:A, 3t58:C, 3t58:D, 3t59:A, 3t59:B, 3t59:C, 3t59:D
10 2oju:B 166 80 0.2075 0.1325 0.2750 1.5 2oju:A
11 6igj:A 167 38 0.1321 0.0838 0.3684 1.9
12 8dgc:A 2028 24 0.1132 0.0059 0.5000 2.0 8dgc:B, 8dgc:C, 8dgc:D
13 5mrc:S 185 52 0.1604 0.0919 0.3269 2.7 3j6b:S, 5mre:S, 5mrf:S
14 2w4l:E 162 70 0.1698 0.1111 0.2571 3.1 2w4l:A, 2w4l:B, 2w4l:D, 2w4l:F
15 2w4l:C 142 69 0.1698 0.1268 0.2609 3.2
16 7mju:A 184 31 0.1415 0.0815 0.4839 3.4 5dag:A, 5dah:B, 5dah:A
17 6jbs:A 762 30 0.1226 0.0171 0.4333 3.8 7ey1:B, 7ey1:A, 7ey2:A, 7ey2:B, 7ey2:C, 7ey2:D, 7ey2:E, 7ey2:F, 7f95:A, 7f95:B, 8gyy:B, 8gyy:A, 8gyy:C, 8gyy:D, 6jbs:C, 6jbs:D, 6kj0:A, 6kj0:B, 7yo6:A, 7yo6:B, 7yo7:B, 7yo7:A
18 3frh:A 241 46 0.1132 0.0498 0.2609 3.8 3b89:A, 3fri:A
19 5gz4:A 804 37 0.1226 0.0162 0.3514 4.2 7cba:A, 7cba:B, 5gz5:A
20 9f2k:A 513 17 0.0755 0.0156 0.4706 5.9
21 6gzt:A 267 68 0.1509 0.0599 0.2353 6.1 6fdk:A, 6fdq:A, 6fdq:B, 6fdu:B, 6gzs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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