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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DDKMNLDFIKSKIAAVPDFPKPGIMFRDITPLLADPQGLRKTAEAMAQELKNKGIQPTIVAGTESRGFIFGVALAEVLGL
GFVPVRKPGKLPRATYSVKYDLEYGSDSLEIHQDAFKVTDEVLVVDDLLATGGTAKATVDLIEKTQAKVAGLIFVMELDG
LGGREVLAGYNVSALIKF

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yw5:A 178 178 1.0000 1.0000 1.0000 3.85e-127 5yw5:B, 5yw5:C, 5yw5:D
2 8izj:B 183 176 0.5225 0.5082 0.5284 5.44e-56 8izj:A, 7y94:A, 7y94:B
3 5znq:A 183 177 0.4888 0.4754 0.4915 9.80e-55 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
4 4m0k:C 176 165 0.4663 0.4716 0.5030 9.85e-51 4m0k:A, 4m0k:B, 4m0k:D
5 6fci:A 179 175 0.4438 0.4413 0.4514 4.97e-46 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
6 5vjp:B 179 161 0.3876 0.3855 0.4286 1.27e-33 1g2p:A, 5vjn:A, 5vjn:B, 5vjp:A
7 1l1q:A 181 156 0.3371 0.3315 0.3846 1.33e-26 1l1r:A
8 1mzv:A 216 150 0.2360 0.1944 0.2800 2.14e-13
9 1qb7:A 236 150 0.2360 0.1780 0.2800 8.71e-12 1qb8:A
10 5vn4:A 237 151 0.2528 0.1899 0.2980 1.26e-10 5vn4:B
11 7rmw:A 270 138 0.2079 0.1370 0.2681 2.34e-06 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
12 6w1i:B 194 150 0.2303 0.2113 0.2733 6.66e-05 2fxv:A, 2fxv:B, 6w1i:A, 6w1i:C, 6w1i:D, 1y0b:A, 1y0b:B, 1y0b:C, 1y0b:D
13 4p86:A 177 115 0.1910 0.1921 0.2957 0.001 4p86:B, 4p86:C, 4p86:D
14 2igb:B 173 117 0.2022 0.2081 0.3077 0.002 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
15 4rv4:B 211 55 0.0955 0.0806 0.3091 0.005 4rv4:A, 4rv4:C
16 8fov:B 500 36 0.0618 0.0220 0.3056 0.060 8fov:A
17 2wns:B 199 148 0.1573 0.1407 0.1892 0.084 2wns:A
18 1i5e:A 208 103 0.1685 0.1442 0.2913 0.16 1i5e:B
19 4paw:A 197 118 0.1348 0.1218 0.2034 0.32 4paw:B
20 6wn8:E 210 46 0.1124 0.0952 0.4348 0.75 6wn8:F, 6wn8:A, 6wn8:B
21 6i21:A 135 46 0.1011 0.1333 0.3913 1.1 6i20:A, 6i20:B, 6i20:C, 6i20:D, 6i22:A, 6i22:B, 6i22:C, 6i22:D, 6i23:A, 6i23:B, 6i24:A, 6i25:A
22 1u9z:A 274 43 0.0955 0.0620 0.3953 1.2 1u9z:B, 1u9z:C, 1u9z:D
23 3qw4:C 447 63 0.0899 0.0358 0.2540 1.2 3qw4:B
24 5ubv:A 244 39 0.0787 0.0574 0.3590 1.3 5ubv:B
25 2btq:A 436 80 0.1517 0.0619 0.3375 1.9 2bto:A, 2bto:B, 5o09:1A, 5o09:2A, 5o09:3A, 5o09:4A, 5o09:5A, 5o09:6A, 5o09:7A, 5o09:8A, 7quq:A, 7quq:C, 7quq:E
26 7f06:A 181 102 0.1573 0.1547 0.2745 2.4 7f06:B
27 6aps:A 185 136 0.1629 0.1568 0.2132 2.9 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
28 2jbh:B 213 36 0.0899 0.0751 0.4444 4.5 2jbh:A
29 3mbi:A 287 42 0.1011 0.0627 0.4286 4.6 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
30 1hjs:A 332 21 0.0730 0.0392 0.6190 7.1 1hju:A, 1hju:D
31 7s9w:A 1238 59 0.1011 0.0145 0.3051 7.6
32 7s9v:A 1296 59 0.1011 0.0139 0.3051 7.8
33 2wet:B 501 31 0.0562 0.0200 0.3226 9.4 2wes:A, 2wes:B, 2wes:C, 2wes:D, 2wet:A, 2wet:C, 2wet:D, 2weu:A, 2weu:B, 2weu:C, 2weu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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