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BioLiP
>protein
DDEGAQWNCTACTFLNHPALIRCEQCEMPRHF

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3a9j:C 32 29 0.9062 0.9062 1.0000 2.78e-17 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
2 1nj3:A 31 30 0.4062 0.4194 0.4333 8.07e-05 1q5w:A
3 7mnr:B 40 27 0.3125 0.2500 0.3704 0.008
4 7mo2:B 38 26 0.2812 0.2368 0.3462 0.017 3ch5:B, 7mo2:D
5 8im5:A 66 24 0.3438 0.1667 0.4583 0.018 3b0a:E
6 2ebq:A 47 26 0.3125 0.2128 0.3846 0.021 2gqe:A, 2k0c:A
7 2crc:A 52 20 0.3125 0.1923 0.5000 0.023
8 2d9g:A 53 27 0.3438 0.2075 0.4074 0.071
9 7yui:B 232 24 0.3438 0.0474 0.4583 0.12 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
10 8pp6:K 36 24 0.2500 0.2222 0.3333 0.16
11 7mns:B 38 25 0.2812 0.2368 0.3600 0.16
12 7mnt:B 38 25 0.2500 0.2105 0.3200 0.33 7mnt:D, 7mnu:B
13 7mnv:B 38 26 0.2188 0.1842 0.2692 0.52
14 7mnp:B 39 23 0.2500 0.2051 0.3478 0.59 7mnp:D, 7mnq:B
15 6zga:A 751 31 0.3125 0.0133 0.3226 3.8 4bzi:A, 4bzi:D, 4bzi:G, 6gni:A, 1m2o:A, 1m2o:C, 2qtv:A, 6zga:E
16 1m2v:A 705 31 0.3125 0.0142 0.3226 4.0
17 9b4h:A 1908 19 0.2500 0.0042 0.4211 4.0 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
18 2c6a:A 46 20 0.2500 0.1739 0.4000 4.6 2c6b:A, 4xxb:B
19 6z2w:E 2325 18 0.3125 0.0043 0.5556 5.2 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
20 2k1p:A 33 25 0.2188 0.2121 0.2800 6.8
21 7z0s:E 532 15 0.2188 0.0132 0.4667 7.3 7z0t:E
22 2cr8:A 53 21 0.2500 0.1509 0.3810 7.5
23 4v12:A 337 21 0.2812 0.0267 0.4286 9.0
24 7c4c:A 332 13 0.2188 0.0211 0.5385 9.9 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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