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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DCRKSTYPPSGPTYRGPVPWYTINLDLPPYKRWHELMVDKAPALKVIVNYLKNMINAFEPSGKIVQLVDQKLPGLLGSFP
GPFEEEMKGIAAVTEIPLGEIILFNIFYEFFTIATSIITEDKEGHLLHARNMDFGVFLGWNVNNNTWVVTEELKPLTVNL
DFQRNSKTVFKAAGFAGYVGMLTGFKPGLFSLTLNERFSGFMGVIEWIFIIRSVLENSTSYEEAKTILTKSKILAPAYFI
LGGSKSGEGCVITRDRVQSLDIYELDPKQGIWYVVQTNYDRWKNPFFLDNRRTPAKMCLNRTTQENISFATMYDVLSTKP
VLNKLTVYTALIDVTKGQFETYLRDCPDPCIGW

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5u84:B 353 353 1.0000 1.0000 1.0000 0.0 5u84:A
2 5u81:A 369 366 0.8329 0.7967 0.8033 0.0
3 6mhm:B 253 253 0.5807 0.8103 0.8103 1.95e-154 6mhm:D
4 6dy2:B 232 243 0.2465 0.3750 0.3580 3.43e-46 6dy2:D
5 6dy0:B 231 244 0.2465 0.3766 0.3566 1.89e-45 6dxz:B
6 6dxx:B 231 247 0.2578 0.3939 0.3684 1.05e-44 6dxx:D, 6dxx:F
7 6dxz:A 95 101 0.0765 0.2842 0.2673 0.011 6dy0:A, 6dy1:A
8 1t5e:C 231 54 0.0425 0.0649 0.2778 2.6 1t5e:E, 1t5e:F, 1t5e:G, 1t5e:H, 1t5e:I, 1t5e:K, 1t5e:L
9 8pvs:A 731 117 0.0822 0.0397 0.2479 3.3 8pvs:B
10 3q08:A 241 57 0.0453 0.0664 0.2807 3.4 3q08:B, 3q08:C, 3q08:D, 3q08:E, 3q08:F, 3q08:G, 3q08:H, 3q08:I, 3q08:J, 3q08:K, 3q08:L, 3q08:M, 3q08:N, 3q08:O, 3q08:P, 3q08:Q, 3q08:R, 3q08:S, 3q08:T, 3q09:A, 3q09:B, 3q09:C, 3q09:D, 3q09:E, 3q09:F, 3q09:G, 3q09:H, 3q09:I, 3q09:J, 3q09:K, 3q09:L, 3q09:M, 3q09:N, 3q09:O, 3q09:P, 3q09:Q, 3q09:R, 3q09:S, 3q09:T, 2vxh:A, 2vxh:B, 2vxh:C, 2vxh:D, 2vxh:E, 2vxh:F
11 7orm:A 2145 55 0.0510 0.0084 0.3273 4.6
12 6sav:A 438 61 0.0510 0.0411 0.2951 5.1 6sav:B
13 3wye:A 255 40 0.0425 0.0588 0.3750 8.3 3wye:B
14 8g6e:I 221 86 0.0538 0.0860 0.2209 8.8 5fmg:I, 5fmg:W, 8g6e:W, 8g6f:I, 8g6f:W, 7lxt:I, 7lxt:W
15 2de6:B 390 66 0.0510 0.0462 0.2727 8.9 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
16 7ovx:A 174 62 0.0453 0.0920 0.2581 8.9 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
17 1xoc:A 504 90 0.0652 0.0456 0.2556 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218