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BioLiP
>protein
DCNRALLTRLHRQTYARLYPVLLVKQDGSTIHIRYREPRRMLTMPVDLDSLSPEERRARFRK

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8oiq:Bd 69 62 1.0000 0.8986 1.0000 1.02e-40 5aj4:B4, 6gaw:B4, 6gb2:B4, 7nqh:B4, 7nql:B4, 7nsh:B4, 7nsi:B4, 7nsj:B4, 4v19:4, 6ydp:B4, 6ydw:B4
2 6i9r:m 60 60 0.8226 0.8500 0.8500 1.01e-32 7a5i:m3, 7odr:m, 7ods:m, 7oi7:m, 7oi8:m, 7oic:m, 7oid:m, 6zs9:m, 6zsa:m, 6zsb:m, 6zsc:m, 6zsg:m
3 8jh1:B 462 48 0.3226 0.0433 0.4167 0.35 8jbb:A, 8jbb:B, 8jh1:A
4 4xup:A 330 36 0.2419 0.0455 0.4167 1.1 4xun:A, 4xun:B, 4xun:C, 4xuo:A, 4xuo:B, 4xup:B, 4xup:C, 4xup:D, 4xup:E, 4xup:F, 4xuq:A, 4xuq:B, 4xuq:C, 4xur:A, 4xur:B, 4xur:C, 4xut:A, 4xut:B, 4xut:C
5 3aw5:A 438 51 0.2581 0.0365 0.3137 3.2 6k3d:A, 8p4g:A, 8p4g:B
6 7r3a:A 411 18 0.1290 0.0195 0.4444 4.0 7r3a:B, 7r3a:C, 7r3a:D, 7r3a:E, 7r3a:F, 7r3a:G, 7r3a:H
7 9cpo:A 930 37 0.2097 0.0140 0.3514 4.1
8 7tvb:A 558 27 0.1774 0.0197 0.4074 7.3 7tva:A, 7tva:B, 7ubt:A, 7uc6:A, 7uc7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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