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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYV
CDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2vi5:E 151 147 1.0000 0.9735 1.0000 3.84e-103 2c92:A, 2c92:B, 2c92:C, 2c92:D, 2c92:E, 2c94:A, 2c94:B, 2c94:C, 2c94:D, 2c94:E, 2c97:A, 2c97:B, 2c97:C, 2c97:D, 2c97:E, 2c9b:A, 2c9b:B, 2c9b:C, 2c9b:D, 2c9b:E, 2c9b:F, 2c9b:G, 2c9b:H, 2c9b:I, 2c9b:J, 2c9d:A, 2c9d:B, 2c9d:C, 2c9d:D, 2c9d:E, 2c9d:F, 2c9d:G, 2c9d:H, 2c9d:I, 2c9d:J, 2vi5:A, 2vi5:B, 2vi5:C, 2vi5:D, 2vi5:F, 2vi5:G, 2vi5:H, 2vi5:I, 2vi5:J, 1w19:A, 1w19:B, 1w19:C, 1w19:D, 1w19:E, 1w29:A, 1w29:B, 1w29:C, 1w29:D, 1w29:E
2 1nqu:A 154 147 0.4626 0.4416 0.4626 1.01e-33 1nqu:B, 1nqu:C, 1nqu:D, 1nqu:E, 1nqv:A, 1nqv:B, 1nqv:C, 1nqv:D, 1nqv:E, 1nqw:A, 1nqw:B, 1nqw:C, 1nqw:D, 1nqw:E, 1nqx:A, 1nqx:E, 1nqx:B, 1nqx:C, 1nqx:D
3 1c41:A 165 155 0.3673 0.3273 0.3484 1.38e-26 1c41:E, 1c41:B, 1c41:C, 1c41:D, 1c41:F, 1c41:J, 1c41:G, 1c41:H, 1c41:I
4 1rvv:A 154 146 0.3605 0.3442 0.3630 3.15e-24 1rvv:E, 1rvv:B, 1rvv:C, 1rvv:D, 1rvv:F, 1rvv:G, 1rvv:H, 1rvv:I, 1rvv:J, 1rvv:K, 1rvv:O, 1rvv:L, 1rvv:M, 1rvv:N, 1rvv:P, 1rvv:Q, 1rvv:R, 1rvv:S, 1rvv:T, 1rvv:U, 1rvv:V, 1rvv:W, 1rvv:X, 1rvv:Y, 1rvv:Z, 1rvv:4, 1rvv:1, 1rvv:2, 1rvv:3, 1zis:A, 1zis:E, 1zis:B, 1zis:C, 1zis:D, 1zis:F, 1zis:G, 1zis:H, 1zis:I, 1zis:J
5 1kyv:E 152 139 0.3537 0.3421 0.3741 3.19e-21 2a57:A, 2a57:E, 2a57:B, 2a57:C, 2a57:D, 2a58:A, 2a58:B, 2a58:C, 2a58:D, 2a58:E, 2a59:A, 2a59:E, 2a59:B, 2a59:C, 2a59:D, 1kyv:A, 1kyv:B, 1kyv:C, 1kyv:D, 1kyx:A, 1kyx:E, 1kyx:B, 1kyx:C, 1kyx:D, 1kyy:A, 1kyy:E, 1kyy:B, 1kyy:C, 1kyy:D
6 4kq6:D 165 148 0.3469 0.3091 0.3446 1.45e-20 4kq6:C, 4kq6:I, 4kq6:J
7 1ejb:A 168 149 0.3401 0.2976 0.3356 2.77e-20 1ejb:B, 1ejb:C, 1ejb:D, 1ejb:E
8 2f59:D 147 145 0.4082 0.4082 0.4138 9.92e-20 2f59:A, 2f59:E, 2f59:B, 2f59:C, 2o6h:A, 2o6h:B, 2o6h:C, 2o6h:D, 2o6h:E
9 1c2y:A 155 142 0.3333 0.3161 0.3451 9.97e-18 1c2y:B, 1c2y:C, 1c2y:D, 1c2y:E, 1c2y:F, 1c2y:J, 1c2y:G, 1c2y:H, 1c2y:I, 1c2y:K, 1c2y:O, 1c2y:L, 1c2y:M, 1c2y:N, 1c2y:P, 1c2y:T, 1c2y:Q, 1c2y:R, 1c2y:S
10 1t13:A 150 141 0.2857 0.2800 0.2979 1.85e-09 1t13:E, 1t13:B, 1t13:C, 1t13:D
11 2obx:A 150 112 0.2449 0.2400 0.3214 3.86e-09 2obx:E, 2obx:B, 2obx:C, 2obx:D, 2obx:F, 2obx:J, 2obx:G, 2obx:H, 2obx:I
12 2g8y:A 359 100 0.1973 0.0808 0.2900 1.4 2g8y:B
13 3aw8:A 360 65 0.1497 0.0611 0.3385 3.0 3aw8:B
14 8ivp:B 322 26 0.0952 0.0435 0.5385 5.1 8ivp:A, 8ivp:C, 8ivp:D
15 6qp1:B 398 41 0.0748 0.0276 0.2683 9.8 6qp1:A, 6qp2:A, 6qp2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218