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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVPRSTQRN
ETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFS

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wk4:b 164 160 1.0000 0.9146 0.9375 4.67e-105 7cgo:Cy, 7cgo:Ci, 7cgo:Ea, 7cgo:Ec, 7cgo:Ed, 7cgo:Ee, 7cgo:Ef, 7cgo:Cr, 7cgo:Cs, 7cgo:Ct, 7cgo:Cm, 7cgo:Cn, 7cgo:Cb, 7cgo:Cc, 7cgo:Cd, 7cgo:Ch, 7cgo:Ca, 7cgo:Eh, 7cgo:Cf, 7cgo:Cg, 7cgo:Cv, 7e81:Ea, 7e81:Ec, 7e81:Ed, 7e81:Ee, 7e81:Ef, 7e81:Cr, 7e81:Cs, 7e81:Ct, 7e81:Cm, 7e81:Cn, 7e81:Cb, 7e81:Cc, 7e81:Cd, 7e81:Ch, 7e81:Ca, 7e81:Fh, 7e81:Cf, 7e81:cg, 7e81:Cv, 8wk4:c, 8wk4:d, 8wk4:W, 8wk4:X, 8wk4:Y, 8wk4:Z, 8wk4:Q, 8wk4:R, 8wk4:S, 8wk4:T, 8wk4:L, 8wk4:M, 8wk4:N, 8wk4:F, 8wk4:G, 8wk4:H, 8wk4:A, 8wk4:B, 8wk4:g, 8wk4:h, 8wk4:a, 8wk4:U, 8wk4:V, 8wk4:O, 8wk4:I, 8wkq:AM, 8wkq:4, 8wl2:Ao, 8wl2:AV, 8wln:AM, 8wln:4, 8wln:x, 8wlt:Ao, 8wlt:AV, 8wlt:BV, 8wo5:Ao, 8wo5:AV, 8wo5:BV, 8woe:Ao, 8woe:AV
2 6z6b:PPP 2036 80 0.1600 0.0118 0.3000 0.44 6z6b:EEE
3 5ol7:A 143 60 0.0933 0.0979 0.2333 0.58
4 6v9q:H 135 31 0.1000 0.1111 0.4839 3.8 6vbw:H
5 6pif:H 198 40 0.1333 0.1010 0.5000 4.1 8fuk:H, 6lnb:A, 6lnc:A, 6pig:H, 6pij:H, 6uvn:A
6 8t2s:D 389 34 0.0800 0.0308 0.3529 5.6 8t2r:D, 8t2t:D, 7uim:D, 7uin:D
7 5es4:B 674 46 0.0733 0.0163 0.2391 5.8 5e6r:B, 5e6s:B, 5e6s:D, 5e6s:F, 5e6u:B, 5es4:D, 5es4:F, 5es4:H, 3k6s:B, 3k6s:D, 3k6s:F, 3k6s:H, 3k71:B, 3k71:D, 3k71:F, 3k71:H, 3k72:B, 3k72:D, 4neh:B, 4nen:B, 7usl:B, 7usm:B
8 6tir:A 285 56 0.1200 0.0632 0.3214 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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