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BioLiP
>protein
DAPTVNDVTSDATQVTGQAEPNSTVKLTFPDGTTATGTADDQGNYTIDIPSNVDLNGGEELQVTATDKDGNTSEPSSANV
TDTTAPDAPTVNDVTSDATQVTGQAEPNSTVKLTFPDGTTATGTADDQGNYTIDIPSNVDLNGGEELQVTATDKDGNTSE
STNTTII

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dm0:A 167 167 1.0000 1.0000 1.0000 4.31e-112 7dm0:B
2 6xi3:AAA 388 158 0.3234 0.1392 0.3418 0.003
3 6xi3:AAA 388 156 0.3054 0.1314 0.3269 0.017
4 6xi3:AAA 388 172 0.3174 0.1366 0.3081 0.023
5 2yn3:C 284 71 0.1257 0.0739 0.2958 0.51 2yn3:A, 2yn3:B, 2yn3:D, 2yn5:A, 2yn5:B
6 6ql9:D 1765 75 0.1377 0.0130 0.3067 0.79 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
7 4ruw:A 386 35 0.0838 0.0363 0.4000 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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