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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DALKVNRAPVGVEPQEVHKWLQSFNWDFKENRTKYPTKYHMANETKEQFKVIAKEYARMEAAKDERQFGTLLDGLTRLGA
GNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDA
RRTRAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGY
QTVVSIANDPASAKFLNTDLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVYEDWGGIWIGRLGKYGVESPAS
LRDAKRDAYWAHHDLALAAYAMWPLGFARLALPDEEDQAWFEANYPGWADHYGKIFNEWKKLGYEDPKSGFIPYQWLLAN
GHDVYIDRVSQVPFIPSLAKGTGSLRVHEFNGKKHSLTDDWGERQWLIEPERYECHNVFEQYEGRELSEVIAEGHGVRSD
GKTLIAQPHTRGDNLWTLEDIKRAGCVFPDPLAKF

The query sequence (length=515) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7m8q:A 515 515 1.0000 1.0000 1.0000 0.0 6d7k:A, 6d7k:E, 7m8q:E, 7m8r:A, 7m8r:E, 1mhy:D, 1mhz:D, 7s6q:A, 7s6q:E, 7s6r:A, 7s6r:E, 7s6s:A, 7s6s:E, 7s6t:A, 7s6t:E, 7s7h:A, 7s7h:E, 6vk4:A, 6vk4:E, 6vk5:A, 6vk5:E, 6vk6:A, 6vk7:A, 6vk8:A, 6vk8:E, 6yd0:D, 6ydi:D, 6ydu:D, 6yy3:D
2 1fzi:A 512 510 0.8097 0.8145 0.8176 0.0 1fyz:A, 1fyz:B, 1fz0:A, 1fz0:B, 1fz1:A, 1fz1:B, 1fz2:A, 1fz2:B, 1fz3:A, 1fz3:B, 1fz4:A, 1fz4:B, 1fz5:A, 1fz5:B, 1fz6:A, 1fz6:B, 1fz7:A, 1fz7:B, 1fz8:A, 1fz8:B, 1fz9:A, 1fz9:B, 1fzh:A, 1fzh:B, 1fzi:B, 4gam:A, 4gam:F, 4gam:K, 4gam:P, 1mmo:D, 1mmo:E, 1mty:D, 1mty:E, 7tc7:D, 7tc7:E, 7tc8:D, 7tc8:E, 1xmf:A, 1xmf:B, 1xmh:A, 1xmh:B, 1xu3:A, 1xu3:B, 1xu5:A, 1xu5:B, 1xvb:A, 1xvb:B, 1xvc:A, 1xvc:B, 1xvd:A, 1xvd:B, 1xve:A, 1xve:B, 1xvf:A, 1xvf:B, 1xvg:A, 1xvg:B
3 2inn:A 496 451 0.1845 0.1915 0.2106 1.19e-14 2inn:B, 2inp:A, 2inp:B, 3u52:A, 3u52:B
4 2inc:A 491 333 0.1476 0.1548 0.2282 3.27e-14 2ind:A, 3n1x:A, 3n1y:A, 3n1z:A, 3n20:A, 2rdb:A, 3rn9:A, 3rna:A, 3rnb:A, 3rnc:A, 3rne:A, 3rnf:A, 3rng:A, 1t0q:A, 1t0r:A, 1t0s:A
5 3dhi:A 498 336 0.1476 0.1526 0.2262 8.90e-13 3dhg:A, 3dhg:D, 3dhh:A, 3ge3:A, 3ge8:A, 3ge8:D, 3i5j:A, 3i63:A, 4p1b:A, 4p1b:D, 4p1c:A, 4p1c:D, 3q14:A, 3q2a:A, 3q3m:A, 3q3m:D, 3q3n:A, 3q3o:A, 3ri7:A, 3rmk:A, 3rmk:D, 5tds:A, 5tds:D, 5tdt:A, 5tdt:D, 5tdu:A, 5tdv:A, 5tdv:D
6 3rmk:E 306 208 0.0874 0.1471 0.2163 5.83e-06 3dhg:B, 3dhg:E, 3dhh:B, 3q2a:B, 3q3m:B, 3q3m:F, 3q3o:B, 3rmk:B, 5tds:B
7 1t0s:B 323 200 0.0718 0.1146 0.1850 0.35
8 7k3z:A 564 81 0.0369 0.0337 0.2346 1.8 7k3z:B, 7k3z:C, 7k3z:D, 7k3z:E, 7k3z:F, 7k3z:G
9 4zlr:A 278 77 0.0447 0.0827 0.2987 3.0 5ex7:A, 4zlr:B
10 1t9m:A 204 55 0.0330 0.0833 0.3091 4.9 1t9m:B
11 4pfq:C 184 130 0.0602 0.1685 0.2385 5.8 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
12 5aij:A 630 113 0.0602 0.0492 0.2743 8.7 5a23:A, 5a23:B, 5a23:C, 5a23:D, 5ajl:A, 5ajl:B, 2cfu:A, 2cfz:A, 2cg2:A, 2cg3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218