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BioLiP
>protein
DALKPEDKVKFRQASYTTMAWNMGKIKAMVVDGTMPFSQTQVSAAANVIAAIANSGMGALYSPDTLGVVGFKKSRLKENF
FQEQDEVRKIATNFVEQANKLAEVAAMGDKDEIKAQFGEVGKACKACHEKFREEE

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5b3i:A 135 135 1.0000 1.0000 1.0000 1.68e-98 5b3i:B, 5b3i:C, 5b3i:D, 8brl:D
2 1bbh:A 131 131 0.5481 0.5649 0.5649 1.98e-36 1bbh:B, 5gyr:A, 5gyr:N, 5gyr:B, 5gyr:E, 5gyr:J, 5gyr:F, 5gyr:I, 5gyr:M
3 3vrc:B 131 130 0.4963 0.5115 0.5154 8.53e-25 3vrc:A
4 4cda:A 127 132 0.3037 0.3228 0.3106 8.44e-17 5agf:A, 4cdv:A, 4cdy:A, 1cgn:A, 1cgo:A, 4cip:A, 4cjg:A, 4cjo:A, 4d4n:A, 4d4x:A, 1e83:A, 1e84:A, 1e85:A, 1e86:A, 5jli:A, 5jp7:A, 5jra:A, 5js5:A, 5jsl:A, 5jt4:A, 5jua:A, 5jve:A, 5nc0:A, 5ngx:A, 4wgy:A, 4wgz:A, 2xl6:A, 2xl8:A, 2xld:A, 2xle:A, 2xlh:A, 2xlm:A, 2xlo:A, 2xlv:A, 2xlw:A, 2xm0:A, 2xm4:A, 2ykz:A, 2yl0:A, 2yl1:A, 2yl3:A, 2yl7:A, 2yld:A, 2ylg:A, 2yli:A, 3zqv:A, 3zqy:A, 3ztm:A, 3ztz:A, 3zwi:A
5 2j8w:A 128 130 0.2815 0.2969 0.2923 2.22e-10 2j8w:B, 2j9b:A, 2j9b:B, 1jaf:A, 1jaf:B
6 4cx9:A 128 132 0.2741 0.2891 0.2803 2.26e-09 4cx9:B, 4ulv:A, 4ulv:B
7 1gqa:A 130 127 0.2741 0.2846 0.2913 1.02e-08 1gqa:D
8 6a3k:A 129 142 0.2444 0.2558 0.2324 7.23e-06 6a3l:A, 6a3l:B, 8h28:A, 8h28:B
9 2ccy:A 127 134 0.2889 0.3071 0.2910 1.34e-04 2ccy:B
10 1s05:A 129 27 0.1037 0.1085 0.5185 0.004
11 8sy7:J 1052 63 0.1630 0.0209 0.3492 0.062 8sy5:J
12 8txo:J 1162 63 0.1630 0.0189 0.3492 0.062
13 8sy6:J 1269 63 0.1630 0.0173 0.3492 0.067
14 7yp9:D 1285 63 0.1630 0.0171 0.3492 0.069
15 5ipl:D 1173 63 0.1630 0.0188 0.3492 0.072 6byu:D, 6byu:J, 6cux:D, 6cux:J, 8hkc:F, 8igr:J, 8igs:J, 4ljz:D, 4lk1:D, 6pst:J, 4s20:I, 5uac:D, 5uac:J, 5uag:D, 5uag:J, 5uah:D, 5uah:J, 5uaj:D, 5uaj:J, 5ual:D, 5ual:J, 5uaq:D, 5uaq:J, 6vjs:D, 6vjs:I, 5vsw:D, 5vsw:J, 5w1s:D, 5w1s:J, 5w1t:D, 5w1t:J, 4xsx:D, 4xsy:D, 4xsz:D, 4yfk:D, 4yfk:J, 4yfn:D, 4yfn:J, 4yfx:D, 4yfx:J, 4yg2:D, 4yg2:J, 4zh2:D
16 4jk1:D 1160 63 0.1630 0.0190 0.3492 0.075 4jk1:I, 4jk2:D, 4jk2:I, 4kmu:D, 4kmu:I, 4kn4:D, 4kn4:I, 4kn7:D, 4kn7:I, 4mex:D, 4mex:J, 4mey:D, 4mey:J, 4s20:D, 4zh3:D, 4zh4:D
17 6n61:D 1239 63 0.1630 0.0178 0.3492 0.075 6n60:D, 6n62:D, 4xsx:J, 4xsy:J, 4xsz:J
18 6awc:04 1345 63 0.1630 0.0164 0.3492 0.080 6b6h:D, 7c17:D, 8egb:J, 6flp:D, 6flq:D, 8fvr:G, 8fvw:G, 6gfw:D, 6gh5:D, 4jkr:D, 4jkr:J, 6ldi:D, 4ljz:J, 4lk0:D, 4lk0:J, 4lk1:J, 4llg:D, 4llg:J, 7m8e:D, 7mkd:J, 7mke:J, 7mki:J, 7mkj:J, 7mkq:D, 7n4e:D, 6omf:D, 6p18:D, 6p19:D, 6p1k:J, 6pb4:D, 6pb5:D, 6pb6:D, 8pbl:G, 6pmi:D, 6pmj:D, 7py3:D, 7pyj:D, 7pyk:D, 8re4:D, 8rea:D, 8reb:D, 8rec:D, 8red:D, 8ree:D, 8to6:J, 8to8:J, 8toe:J, 7ubm:D, 7ubn:D, 5ui8:J, 7uwe:J, 7uwh:J, 5vt0:J, 7vwy:D, 7vwz:D, 7w5w:D, 7w5x:D, 7w5y:D, 6xas:J, 6xav:J, 6xh7:D, 6xh8:D, 6xl5:D, 6xlj:D, 6xll:D, 6xlm:D, 6xln:D, 7xui:J, 8y6u:D, 7ypb:D, 4zh2:J, 4zh3:J, 4zh4:J, 6ztj:CD, 6ztl:CD, 6ztm:CD, 6ztn:CD, 6zto:CD, 6ztp:CD, 6zu1:CD
19 5my1:Y 1372 63 0.1630 0.0160 0.3492 0.083 8aby:D, 8abz:D, 8ac0:D, 8ac1:D, 8ac2:D, 8acp:D, 7adb:Y, 7adc:Y, 7add:Y, 7ade:Y, 8ad1:D, 6alf:J, 6alg:J, 6alh:J, 6asx:J, 7bef:D, 7beg:D, 6bjs:J, 6c6s:J, 6c6t:J, 6c6u:J, 6c9y:D, 7c97:D, 6ca0:D, 7chw:D, 7d7c:D, 7d7d:D, 7dy6:D, 8e3f:B, 8e5k:B, 8e5o:B, 8e6x:B, 8e6z:B, 8eg7:J, 8eg8:J, 8eh8:J, 8eh9:J, 8eha:J, 8ehf:J, 8ehi:J, 8f1i:J, 8f1j:J, 8f1k:J, 8f3c:J, 8fix:D, 8fiy:D, 8ftd:J, 8g00:J, 8g1s:J, 8g2w:J, 8g4w:J, 8g7e:J, 8g8z:J, 6gov:Y, 5ipm:D, 5ipn:D, 3iyd:D, 6jbq:D, 6jnx:D, 8jo2:D, 6k4y:D, 8k58:D, 8k5a:D, 7khb:D, 7khc:D, 7khe:D, 7khi:D, 3lu0:D, 7mkn:D, 7mko:D, 7mkp:D, 5ms0:D, 6n4c:D, 6n57:J, 6n58:J, 5nwt:D, 6oul:J, 8pdy:J, 8pen:J, 8pfg:J, 8pfj:J, 8ph9:J, 8phk:J, 8pib:J, 8pid:J, 8pil:J, 8pim:J, 6psq:J, 6psr:J, 6pss:J, 6psu:J, 6psv:J, 6psw:J, 7py0:D, 7py1:D, 7py5:D, 7py6:D, 7py7:D, 7py8:D, 7q0j:D, 7q0k:D, 6rh3:D, 6ri7:D, 6ri9:D, 6rin:D, 6rip:D, 7szj:D, 7szk:D, 8to1:J, 8tom:J, 6tqn:Y, 6tqo:Y, 8u3b:D, 8upo:AE, 8upr:AE, 8uql:AE, 8uqm:AE, 8uqp:AE, 8ur0:AE, 8urh:AE, 8uri:AE, 8urx:AE, 8ury:AE, 6utv:DDD, 6utw:DDD, 6utx:DDD, 6uty:DDD, 6utz:DDD, 6uu0:DDD, 6uu1:DDD, 6uu2:DDD, 6uu3:DDD, 6uu4:DDD, 6uu5:DDD, 6uu6:DDD, 6uu7:DDD, 6uu8:DDD, 6uu9:DDD, 6uua:DDD, 6uub:DDD, 6uuc:DDD, 6vu3:AE, 6vyq:AE, 6vyr:AE, 6vys:AE, 6vyt:AE, 6vyu:AE, 6vyw:AE, 6vyx:AE, 6vyy:AE, 6vyz:AE, 6vz2:AE, 6vz3:AE, 6vz5:AE, 6vz7:AE, 6vzj:AE, 6wmu:D, 6x26:J, 6x2f:J, 6x2n:J, 6x43:J, 6x4w:J, 6x4y:J, 6x50:J, 6x6t:AE, 6x7f:AE, 6x7k:AE, 6x9q:AE, 6xdq:AE, 6xdr:AE, 6xgf:AE, 6xii:AE, 6xij:AE, 6xl9:D, 7xue:J, 7xug:J, 4yln:D, 4yln:J, 4yln:P, 4ylo:D, 4ylo:J, 4ylo:P, 4ylp:D, 4ylp:J, 4ylp:P, 7ypa:D, 6z9p:Y, 6z9q:Y, 6z9r:Y, 6z9s:Y, 6z9t:Y
20 1cpq:A 129 17 0.0667 0.0698 0.5294 0.39 1cpr:A, 1nbb:A, 1nbb:B, 1rcp:A, 1rcp:B
21 7ane:i 267 24 0.0815 0.0412 0.4583 0.53
22 6r6n:A 111 28 0.0667 0.0811 0.3214 0.63 6r6m:A, 6r6o:A
23 3op4:A 247 102 0.2074 0.1134 0.2745 0.68 4i08:A, 4i08:B, 3op4:B, 3rsh:A, 3rsh:B, 4wk6:A, 4wk6:B, 4wk6:C, 4wk6:D
24 8oi7:A 346 58 0.1481 0.0578 0.3448 0.70 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
25 6hiv:CO 361 24 0.0815 0.0305 0.4583 0.91 7aor:i, 6hiw:CO, 6hiy:CO, 7pua:CO, 7pub:CO, 6sga:CO, 6sgb:CO
26 5ckw:B 400 66 0.1407 0.0475 0.2879 1.1 5ckw:A
27 1a7v:A 125 24 0.0815 0.0880 0.4583 1.2 1a7v:B, 1mqv:A, 1mqv:B
28 2x4f:A 289 49 0.1185 0.0554 0.3265 3.9 2x4f:B
29 5mss:A 717 113 0.2148 0.0404 0.2566 5.8 5mst:A, 5mst:B, 5msw:A
30 6rm3:LHH 120 32 0.0889 0.1000 0.3750 6.6
31 4fo0:A 502 24 0.0741 0.0199 0.4167 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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