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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAKQVKVLQLINAYRFRGHEAAELDPLGLWQRPTVAELDPAFHNLTEDDFEETFNVGSFAVGQETMPLKDIYTALKKTYC
GSIGAEYMHMTDTEQKRWIQQRLESVVGQPSFDKDEKRTFLAELTAAEGLERYLGAKFPGAKRFSLEGGDAMIPMMKELI
RHAGRSGMREVVIGMAHRGRLNMLVNVLGKKPQDLFDEFAGKGTGDVKYHQGFSADFATPGGDVHLALAFNPSHLEIVNP
VVMGSVRARQDRLGDDDGSKVLPITIHGDSAIAGQGVVAETFNMSQARGFCVGGTVRVVVNNQVGFTTSNPRDTRSTMYC
TDIAKMVQAPIFHVNADDPEAVAFVTRIALDYRNEFKRDVVIDLVCYRRHGHNEADEPNATQPLMYQKIKKHPTPRKLYA
DVLIDRNECDIETATQMVNEYRDALDHGEVVVKEWRPMAYLGHEWDTPWSNTYDKQRLVELGKRLCQYPESHTLHSRVSK
LYNDRTAMTNGEKELDWGMAETLAYATLVDDGKRIRISGQDSGRGTFFHRHAVLHNQNDASTYVPLANIHDKQGPFEVFD
SVLSEEAVLAFEYGYATAEPSGLTLWEAQFGDFANGAQVVIDQFISSGEQKWARLCGLTMLLPHGYEGQGPEHSSARLER
YLQLCAEQNMQVVVPSTPAQVYHMIRRQVVRPMRRPLIVMSPKSLLRHPLCTSSLDDLANGTFMPAIPEIDELDPAKVKR
VVFCSGKVYFDLLEQRRNNEQDDVAIVRIEQLYPFPMDDVKAAIAPYVNVEDFVWCQEEPQNQGAWYCSQHNFRAAIPAG
TELKYAGRPASASPAVGYMSVHLKQQKALIDDALNV

The query sequence (length=836) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6km9:B 845 845 1.0000 0.9893 0.9893 0.0 6km9:A, 6kma:A, 6kma:B, 6kma:C, 6kma:D
2 6vef:A 844 849 0.7536 0.7464 0.7420 0.0 6vef:B
3 2jgd:A 812 847 0.7297 0.7512 0.7202 0.0 2jgd:B
4 8p5v:A 1121 861 0.4474 0.3336 0.4344 0.0 8p5t:A, 8p5t:B, 8p5t:C, 8p5t:D, 8p5t:E, 8p5t:F, 8p5u:A, 8p5u:B, 8p5u:C, 8p5u:D, 8p5u:E, 8p5u:F, 8p5v:B, 8p5v:E, 8p5v:D, 8p5v:C, 8p5v:F, 8p5w:A, 8p5w:B, 8p5w:C, 8p5w:D, 8p5w:E, 8p5w:F
5 8p5r:C 1109 855 0.4533 0.3417 0.4433 0.0 6i2q:A, 6i2r:A, 6i2r:C, 6i2s:A, 8p5r:A, 8p5r:B, 8p5r:D, 8p5r:E, 8p5r:F, 6r2b:A, 6r2b:D, 6r2c:A, 6r2c:B, 6r2c:C, 6r2c:D, 6r2d:A, 6r2d:B, 6r2d:C, 6r2d:D, 2xt6:A, 2xt6:B, 2xta:A, 2xta:B, 2xta:C, 2xta:D, 2y0p:D, 2yic:A, 2yic:B, 2yic:C, 2yic:D, 2yid:A, 2yid:B, 2yid:C, 2yid:D, 3zhq:A, 3zhq:B, 3zhq:C, 3zhq:D, 3zhr:A, 3zhr:B, 3zhr:C, 3zhr:D, 3zhs:A, 3zhs:B, 3zhs:C, 3zhs:D, 3zht:A, 3zht:B, 3zht:C, 3zht:D, 3zhu:A, 3zhu:B, 3zhu:C, 3zhu:D, 3zhv:A, 3zhv:B, 3zhv:C, 3zhv:D
6 8p5s:A 1087 844 0.4426 0.3404 0.4384 0.0 8p5x:A, 8p5x:B, 8p5x:C, 8p5x:D, 8p5x:E, 8p5x:F
7 2y0p:C 856 864 0.4486 0.4381 0.4340 0.0 6r29:A, 6r29:B, 6r2a:A, 6r2a:B, 6r2b:B, 6r2b:C, 2y0p:A, 2y0p:B
8 8i0k:A 875 885 0.4533 0.4331 0.4282 0.0 8i0k:B, 7wgr:A, 7wgr:B
9 6u3j:A 876 865 0.4055 0.3870 0.3919 0.0 5rvw:A, 5rvw:B, 5rvx:A, 5rvx:B, 5rvy:A, 5rvy:B, 5rvz:A, 5rvz:B, 5rw0:A, 5rw0:B, 5rw1:A, 5rw1:B, 6sy1:A, 6sy1:B, 6u3j:B
10 3exe:A 363 172 0.0538 0.1240 0.2616 2.54e-06 6cfo:A, 6cfo:C, 3exe:C, 3exe:E, 3exe:G, 3exf:A, 3exf:C, 3exf:E, 3exf:G, 3exh:A, 3exh:C, 3exh:G, 1ni4:C, 1ni4:A, 2ozl:A, 2ozl:C
11 2j9f:D 329 146 0.0478 0.1216 0.2740 3.31e-05 1dtw:B, 2j9f:B
12 3rha:A 459 78 0.0263 0.0479 0.2821 0.17 3rha:B
13 6pt4:B 473 66 0.0251 0.0444 0.3182 0.36 6pt4:A, 6pt6:B, 6pt6:A, 6pt9:A, 6pt9:B, 6ptk:A, 6ptk:B, 6ptk:C, 6ptk:D
14 2hl3:A 76 55 0.0239 0.2632 0.3636 0.78 3e2u:A, 3e2u:D, 3e2u:B, 3e2u:C, 2hqh:A, 2hqh:B, 2hqh:C, 2hqh:D
15 6jc3:A 391 46 0.0191 0.0409 0.3478 1.8
16 1j6t:A 144 31 0.0144 0.0833 0.3871 3.4
17 5jo9:A 239 46 0.0191 0.0669 0.3478 3.9
18 7vl3:A 707 33 0.0120 0.0141 0.3030 4.3 7vkx:A, 7vkx:B, 7vky:A, 7vky:B, 7vkz:A, 7vkz:B, 7vl0:A, 7vl0:B, 7vl1:A, 7vl1:B, 7vl2:A, 7vl2:B, 7vl3:B, 7vl4:A, 7vl4:B, 7vl5:B, 7vl6:A, 7vl6:B, 7vl7:A, 7vl7:B, 7x87:A, 7x87:B
19 8jiv:CE 175 46 0.0227 0.1086 0.4130 4.4
20 7sgx:D 208 49 0.0227 0.0913 0.3878 5.1 7n4p:A, 7scm:A, 7scm:B, 7sgx:A, 7sgx:B, 7sgx:C
21 3vjr:A 193 65 0.0287 0.1244 0.3692 6.3 3vjr:C
22 8qhp:A 410 89 0.0299 0.0610 0.2809 6.4 8qhp:B
23 4v3p:LG 219 51 0.0239 0.0913 0.3922 6.8 8ip8:LB, 8ipa:LB, 8ipb:LB, 4v7e:CE
24 1ojn:A 722 128 0.0359 0.0416 0.2344 7.5 2brp:A, 2brw:A, 2brw:B, 1c82:A, 1egu:A, 1f9g:A, 1loh:A, 1lxk:A, 1n7q:A, 1n7r:A, 1ojm:A, 1ojo:A, 1ojp:A, 1w3y:A
25 3l1o:L 214 39 0.0179 0.0701 0.3846 9.1 2v17:L
26 6dcf:C 858 62 0.0263 0.0256 0.3548 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218