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BioLiP
>protein
DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAPEEEVKLE

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2hf1:A 61 61 1.0000 1.0000 1.0000 1.21e-37 2hf1:B
2 2kpi:A 56 52 0.4262 0.4643 0.5000 8.56e-10
3 6zxw:H 57 48 0.3443 0.3684 0.4375 3.99e-04
4 8dh3:M 775 15 0.1639 0.0129 0.6667 5.9 8dh0:N
5 1i8t:A 367 28 0.1803 0.0300 0.3929 6.9 1i8t:B
6 8ois:AB 279 15 0.1148 0.0251 0.4667 7.7 7a5i:b6, 7a5k:b6, 8k2a:Sk, 7po2:1, 7qi4:A1, 7qi5:A1, 7qi6:A1, 8xt0:Sk, 8xt2:Sk
7 8dhl:B 853 23 0.1475 0.0106 0.3913 8.1 8dhl:A
8 1e94:E 408 36 0.2131 0.0319 0.3611 8.3 1do0:A, 1do0:B, 1do0:D, 1do0:E, 1do2:A, 1do2:C, 1e94:F, 1hqy:E, 1hqy:F, 1ht1:E, 1ht1:F, 1ht1:G, 1ht1:I, 1ht2:E, 1ht2:F, 1ht2:G, 1ht2:H, 6pxk:H, 6pxk:L, 6pxk:B, 6pxl:C, 6pxl:D, 6pxl:H, 6pxl:L, 1yyf:A, 1yyf:B
9 3jd5:k 275 15 0.1148 0.0255 0.4667 9.4 8oin:AB, 8oip:AB, 6ydw:Ak

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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