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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAGDQLVEKIKPFAKRTMRPEVLGDLGGFGALVEIGKKYQNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDIL
VQGAEPLFFLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVGVVEKENVITGLSVG
AGDMVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLREAVIAPTRLYVKPILAALEKFTIKGMAHITGGGITEN
VPRVLPKNTVAQIDAESWELPKLFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVRSFLSGQGETVYRLGCIRER
QGNEHQTQVA

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5vk4:B 330 330 1.0000 1.0000 1.0000 0.0 5vk4:A
2 1cli:A 341 318 0.5636 0.5455 0.5849 1.19e-136 1cli:B, 1cli:C, 1cli:D
3 3p4e:A 323 329 0.5667 0.5789 0.5684 1.38e-132
4 3m84:A 348 326 0.4182 0.3966 0.4233 1.21e-84 3qty:A, 3qty:B
5 3mdo:A 365 329 0.2576 0.2329 0.2584 2.65e-14 3mdo:B
6 5cm7:A 305 180 0.1364 0.1475 0.2500 2.06e-04 5cc8:A, 5cc8:B, 5cm7:B, 5dd7:A, 5dd7:B, 6mfm:A, 6mfm:B
7 3vti:C 305 161 0.1182 0.1279 0.2422 0.054 3vti:D
8 2z1u:A 335 110 0.0818 0.0806 0.2455 1.00
9 6ezl:A 392 116 0.0970 0.0816 0.2759 2.0 6ezl:B
10 7du3:B 327 59 0.0515 0.0520 0.2881 2.1 7du3:A, 8yku:A
11 3vyt:C 336 56 0.0515 0.0506 0.3036 2.9 3vys:C, 3wjp:A, 3wjq:A, 3wjr:A
12 7c23:A 194 48 0.0424 0.0722 0.2917 4.0 7c29:A, 7c29:B
13 3u0o:B 335 91 0.0758 0.0746 0.2747 4.3 3u0o:A
14 3c9u:B 312 126 0.0970 0.1026 0.2540 4.9 3c9r:A, 3c9r:B, 3c9s:A, 3c9s:B, 3c9t:A, 3c9t:B, 3c9u:A
15 3viu:A 703 46 0.0424 0.0199 0.3043 5.2
16 6zhk:A 438 185 0.1394 0.1050 0.2486 5.5 6zhk:B
17 7tvb:A 558 60 0.0545 0.0323 0.3000 7.6 7tva:A, 7tva:B, 7ubt:A, 7uc6:A, 7uc7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218