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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIKAMA

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8g61:5A 150 143 1.0000 0.9533 1.0000 2.11e-105 8g5y:5A, 8g5z:5A, 8y0w:5
2 7oyd:t 126 142 0.8601 0.9762 0.8662 1.97e-85
3 7oya:11 138 142 0.7972 0.8261 0.8028 6.50e-83
4 7oyc:11 136 142 0.8042 0.8456 0.8099 2.65e-81
5 5gak:q 154 143 0.6434 0.5974 0.6434 3.69e-71 8aaf:v, 8agt:v, 8agu:v, 8agv:v, 8agx:v, 8agz:v, 8bn3:eI, 5dat:f, 5dc3:f, 5dge:f, 5dgf:f, 8k2d:CE, 5mc6:BT, 7nrc:Ls, 7rr5:5, 6tnu:eI, 8y0u:5
6 8ovs:AAA 276 63 0.1608 0.0833 0.3651 0.12 8ovs:BBB
7 4fu4:A 368 71 0.1608 0.0625 0.3239 0.34 830c:A, 830c:B, 456c:A, 456c:B, 4a7b:A, 4a7b:B, 5b5o:A, 5b5o:B, 5b5p:A, 5b5p:B, 5bot:A, 5bot:B, 5boy:A, 5boy:B, 5bpa:A, 5bpa:B, 1cxv:A, 1cxv:B, 2d1n:A, 2d1n:B, 2e2d:A, 3elm:A, 3elm:B, 1eub:A, 1fls:A, 1fm1:A, 4fu4:B, 4fvl:A, 4fvl:B, 4g0d:A, 4g0d:B, 4g0d:C, 4g0d:D, 6hv2:A, 3i7g:A, 3i7g:B, 3i7i:A, 3i7i:B, 4jp4:A, 4jp4:B, 4jpa:A, 4jpa:B, 7ju8:A, 7ju8:B, 3kec:A, 3kec:B, 3kej:A, 3kej:B, 3kek:A, 3kek:B, 3kry:A, 3kry:B, 3kry:C, 3kry:D, 4l19:A, 4l19:B, 3ljz:A, 3ljz:B, 3ljz:C, 3ljz:D, 3o2x:A, 3o2x:B, 3o2x:C, 3o2x:D, 2ow9:A, 2ow9:B, 2ozr:A, 2ozr:B, 2ozr:C, 2ozr:D, 2ozr:E, 2ozr:F, 2ozr:G, 2ozr:H, 1pex:A, 2pjt:A, 2pjt:B, 2pjt:C, 2pjt:D, 3tvc:A, 5uwk:A, 5uwk:B, 5uwl:A, 5uwl:B, 5uwm:A, 5uwm:B, 5uwn:A, 5uwn:B, 5uwn:C, 5uwn:D, 5uwn:E, 3wv1:A, 3wv1:B, 3wv2:A, 3wv2:B, 3wv3:A, 3wv3:B, 1xuc:A, 1xuc:B, 1xud:A, 1xud:B, 1xur:A, 1xur:B, 2yig:A, 2yig:B, 1you:A, 1you:B, 1ztq:A, 1ztq:B, 1ztq:C, 1ztq:D, 3zxh:A, 3zxh:B
8 8t41:A 859 131 0.2308 0.0384 0.2519 0.71
9 6s6y:A 548 88 0.1469 0.0383 0.2386 2.4 6s6y:E, 6s6y:I, 6s6y:M
10 4mfz:A 319 51 0.0979 0.0439 0.2745 5.2
11 5zr1:B 374 55 0.0979 0.0374 0.2545 7.2 7mca:B, 6rqc:B, 7tjf:B, 7tjh:B, 7tji:B, 7tjj:B, 7tjk:B, 5v8f:B
12 6wgi:B 325 50 0.0979 0.0431 0.2800 7.7
13 6a2l:B 521 28 0.0839 0.0230 0.4286 8.0 6kp2:A, 8yq8:B
14 6a2p:B 551 28 0.0839 0.0218 0.4286 8.1 6a2k:A, 6a2k:B, 6a2l:A, 6a2m:A, 6a2m:B, 6a2n:A, 6a2n:B, 6a2o:A, 6a2o:B, 6a2p:A, 7ctw:A, 7ctw:B, 7cty:A, 7cty:B, 7ctz:A, 7ctz:B, 3dg8:A, 3dg8:B, 3dg8:C, 3dg8:D, 3dga:A, 3dga:B, 3dga:C, 3dga:D, 4dp3:A, 4dp3:B, 4dpd:A, 4dpd:B, 4dph:A, 4dph:B, 7f3y:A, 7f3y:B, 7f3z:A, 7f3z:B, 1j3i:A, 1j3i:B, 1j3i:C, 1j3i:D, 1j3j:A, 1j3j:B, 1j3j:C, 1j3j:D, 1j3k:A, 1j3k:B, 1j3k:C, 1j3k:D, 8jfb:A, 8jfb:B, 8jfc:A, 8jfc:B, 8jfd:A, 8jfd:B, 3jsu:A, 3jsu:B, 6kot:A, 6kot:B, 6kp2:B, 6kp7:A, 6kp7:B, 6kpr:A, 6kpr:B, 6leu:A, 6leu:B, 6lev:A, 6lev:B, 6lez:A, 6lez:B, 6lh9:A, 6lh9:B, 6lhi:A, 6lhi:B, 6lhj:A, 6lhj:B, 3qg2:A, 3qg2:B, 3qgt:A, 3qgt:B, 3um5:A, 3um5:B, 3um6:A, 3um6:B, 3um8:A, 3um8:B, 8wgm:A, 8wgm:B, 8yq8:A, 8yq9:A, 8yq9:B
15 3gxa:C 244 71 0.1329 0.0779 0.2676 9.4 6dzx:A, 6dzx:B, 6dzx:C, 6dzx:D, 6dzx:E, 6dzx:F, 3gxa:A, 3gxa:B, 3gxa:D, 3gxa:E, 3gxa:F, 3ir1:A, 3ir1:B, 3ir1:C, 3ir1:D, 3ir1:E, 3ir1:F, 6oja:A, 6oja:B, 6oja:C, 6oja:D, 6oja:E, 6oja:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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