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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DAFVSDQAEAKGFIEDSSLDLLLRNYYFNRDDRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTDDYSRAGGAV
KVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGVQLQSSEFEGLDLEAGHFTEELYATYAGETAKSADFIGGRYAITD
NLSASLYGAELEDIYRQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVH
GDQPFDYIGFGGAGGDSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNY
GYGEDGKHHETNLEAKYVVQSGPAKDLSFRIRQAWHRANADQGEGDQNEFRLIVDYPLSILG

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2odj:B 388 381 0.9791 0.9639 0.9816 0.0 4foz:A, 2odj:A, 3sy7:A
2 3sy9:B 372 381 0.4424 0.4543 0.4436 3.17e-96 3sy9:A, 3sy9:C, 3sy9:D
3 3t24:A 377 396 0.4319 0.4377 0.4167 3.20e-86 3t24:B, 3t24:C
4 3syb:A 408 395 0.4136 0.3873 0.4000 5.23e-80
5 3szv:A 364 378 0.3796 0.3984 0.3836 3.07e-77 2y0k:A
6 3t0s:A 361 380 0.3743 0.3961 0.3763 3.16e-68 2y0h:A
7 3szd:B 371 391 0.3901 0.4016 0.3811 9.32e-67 4fms:B, 4fms:A, 3szd:A
8 4fso:A 354 378 0.3534 0.3814 0.3571 1.77e-65 4fso:B
9 2y2x:B 378 400 0.3901 0.3942 0.3725 1.71e-62 2qtk:A, 2qtk:B, 3sys:A, 3sys:B, 2y2x:A
10 4fsp:A 364 385 0.3743 0.3929 0.3714 1.06e-61
11 4ft6:A 387 409 0.3796 0.3747 0.3545 3.49e-61
12 4frx:B 400 420 0.3429 0.3275 0.3119 2.39e-56 4frx:A
13 5dl5:A 416 429 0.3848 0.3534 0.3427 3.77e-54
14 5dl7:A 402 416 0.3089 0.2935 0.2837 1.11e-35
15 5dl8:B 391 318 0.2199 0.2148 0.2642 9.79e-13 5dl8:A
16 7vu2:A 435 86 0.0654 0.0575 0.2907 0.56 7vu3:A
17 3wqm:A 294 102 0.0681 0.0884 0.2549 1.5 4cmx:A, 4cmx:B, 4kt8:A, 3wqk:A, 3wql:A, 3wql:B, 3wql:C, 3wql:D, 3wqn:A
18 7w62:E 141 34 0.0393 0.1064 0.4412 3.7 7bsm:D, 7bsm:F, 7bsm:G, 7bsm:J, 7bsm:K, 7bsm:L, 7bsm:M, 7bsm:N, 7bsm:H, 7bsm:I, 7bsn:A, 7bsn:B, 7bsn:C, 7bsn:E, 7bsn:F, 7bsn:H, 7bsn:I, 7bsn:J, 7bsn:K, 7bsn:N, 7bsn:D, 7bsn:G, 7bsn:L, 7bsn:M, 7bt8:B, 7bt8:D, 7bt8:E, 7bt9:B, 7bt9:G, 7bt9:A, 7bt9:D, 7bt9:E, 7bt9:F, 7bt9:C, 7bt9:H, 7bt9:I, 7bt9:J, 7bt9:K, 7bt9:L, 7bt9:M, 7bt9:N, 7btl:B, 7btl:A, 7btl:E, 7btl:F, 7btl:C, 7btl:G, 7btl:D, 7ded:B, 7ded:C, 7ded:F, 7ded:E, 7w62:B, 7w62:J, 7w62:G, 7w62:A, 7w62:D, 7w62:F, 7w62:C, 7w62:H, 7w62:I, 7w62:K, 7w62:L, 7w62:M, 7w62:N
19 2ilu:A 477 78 0.0681 0.0545 0.3333 7.3 2imp:A, 2opx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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