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BioLiP
>protein
DAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNV
SFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKNVE

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4edn:A 127 125 1.0000 0.9843 1.0000 2.98e-87 4edn:B, 4edn:C, 4edn:D, 4edn:E, 4edn:F, 4edn:G
2 2k2r:A 129 125 0.8880 0.8605 0.8880 2.19e-77 2vzd:A, 2vzd:B, 2vzg:B, 2vzi:B
3 2wa5:A 237 116 0.2240 0.1181 0.2414 2.49e-04 2wa7:A
4 6sl2:A 619 103 0.1920 0.0388 0.2330 0.004 5nl7:A, 6sl3:A
5 4q57:B 244 107 0.2160 0.1107 0.2523 0.006
6 5f23:A 263 44 0.1200 0.0570 0.3409 1.6
7 5bvr:A 229 108 0.2080 0.1135 0.2407 1.7
8 7aq4:B 588 92 0.2160 0.0459 0.2935 3.2 7apy:A, 7apy:B, 7aq0:A, 7aq0:B, 7aq2:A, 7aq2:B, 7aq3:A, 7aq3:B, 7aq4:A, 7aq5:A, 7aq5:B, 7aq6:A, 7aq6:B, 7aq7:A, 7aq7:B, 7aq8:A, 7aq8:B, 7aq9:A, 7aq9:B, 7aqa:A, 7aqa:B, 7qba:H, 7qba:I, 6rkz:A, 6rkz:B, 6rl0:A, 6rl0:B, 6rl0:C, 6rl0:D, 3sbp:A, 3sbp:B, 3sbp:C, 3sbp:D, 3sbp:E, 3sbp:F, 3sbp:G, 3sbp:H, 3sbq:A, 3sbq:B, 3sbr:A, 3sbr:B, 3sbr:C, 3sbr:D, 3sbr:E, 3sbr:F, 3sbr:G, 3sbr:H, 6y6y:A, 6y6y:B, 6y71:A, 6y71:B, 6y72:A, 6y72:B, 6y77:A, 6y77:B, 6y7d:A, 6y7d:B, 6y7e:A, 6y7e:B
9 5na1:A 398 50 0.1200 0.0377 0.3000 3.6 5na4:A
10 8szq:A 861 53 0.1280 0.0186 0.3019 5.9 3llm:A, 3llm:B, 8szp:A, 8szp:B, 8szr:A, 8szs:A
11 4ye2:A 142 65 0.1360 0.1197 0.2615 7.1
12 2ong:A 543 96 0.1840 0.0424 0.2396 7.1 2ong:B, 2onh:A, 2onh:B
13 1nol:A 607 46 0.1120 0.0231 0.3043 7.7 1ll1:A, 1lla:A
14 1oxy:A 573 46 0.1120 0.0244 0.3043 7.8
15 8atu:A 2837 25 0.0880 0.0039 0.4400 9.2 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
16 8auw:A 2900 25 0.0880 0.0038 0.4400 9.9
17 5tze:C 349 20 0.0880 0.0315 0.5500 9.9 5tze:E, 5tzj:C, 5tzj:A, 5tzk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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