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BioLiP
>protein
DAEIKGIKPKVIEEYSLSQGSGPSNDSWKSLMSSAKDTPLQYDHMNRESLKKYFNPNAQLIEDPLDKPIQYRVCEKCGKP
LALTAIVDHLE

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3mhh:E 92 91 1.0000 0.9891 1.0000 1.11e-64 6aqr:E, 4fip:D, 4fip:H, 4fjc:D, 4fk5:E, 3m99:D, 3mhs:E, 6t9l:N, 4wa6:E, 4zux:Y, 4zux:d, 4zux:i, 4zux:n
2 4w4u:E 84 91 0.8791 0.9524 0.8791 1.10e-52 4fjc:H, 4w4u:H, 4wa6:H
3 2lo3:A 44 37 0.4066 0.8409 1.0000 4.29e-22
4 1wyw:A 216 50 0.1868 0.0787 0.3400 0.022 5cys:A, 5ff8:A, 4fnc:A, 5hf7:A, 4jgc:A, 5jxy:A, 2rba:A, 2rba:B, 5t2w:A, 6u15:A, 6u16:A, 6u17:A, 3ufj:B, 3ufj:A, 3uo7:A, 3uo7:B, 3uob:A, 3uob:B, 4xeg:A, 4z3a:A, 4z47:A, 4z7b:A, 4z7z:A
5 3mhh:C 93 42 0.1648 0.1613 0.3571 0.057 6aqr:C, 4fk5:C, 3kjl:E, 3kjl:H, 3m99:B, 3mhs:C, 6t9l:M, 4wa6:C, 4zux:W, 4zux:b, 4zux:g, 4zux:l
6 6sg9:Fe 122 22 0.0989 0.0738 0.4091 1.1 6sgb:Fe
7 6z1p:Bw 662 45 0.1429 0.0196 0.2889 1.2
8 3oak:A 151 61 0.1758 0.1060 0.2623 2.5
9 6gjc:A 2770 35 0.1099 0.0036 0.2857 2.7 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
10 4v8l:D 2822 40 0.1319 0.0043 0.3000 3.4 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
11 3ax6:A 360 69 0.1978 0.0500 0.2609 4.8 3ax6:B, 3ax6:C, 3ax6:D
12 6dm6:A 378 54 0.1978 0.0476 0.3333 5.6 6dm6:B, 6ptv:B, 6ptv:C
13 3wqy:A 905 43 0.1648 0.0166 0.3488 5.6 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
14 1foh:C 656 68 0.1978 0.0274 0.2647 6.2 1foh:A, 1foh:B, 1foh:D, 1pn0:A, 1pn0:B, 1pn0:C, 1pn0:D
15 2hzs:B 235 33 0.1538 0.0596 0.4242 6.3 2hzs:F, 2hzs:D, 2hzs:H, 3rj1:E, 3rj1:L, 3rj1:S
16 2nox:B 266 41 0.1319 0.0451 0.2927 7.0 2nox:A, 2nox:C, 2nox:D, 2nox:E, 2nox:F, 2nox:G, 2nox:H, 2nox:I, 2nox:J, 2nox:K, 2nox:L, 2nox:M, 2nox:N, 2nox:O, 2nox:P
17 7kha:I 385 42 0.1758 0.0416 0.3810 7.5
18 8dfs:I 555 42 0.1758 0.0288 0.3810 9.0 8dej:J, 8dej:K, 8dex:I, 8dfa:I, 8dfa:J, 8dfo:I
19 5cxw:A 376 32 0.1319 0.0319 0.3750 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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