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BioLiP
>protein
DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b3j:A 55 40 1.0000 0.7273 1.0000 5.89e-24 7b3k:A, 8kf1:F, 8kf1:B, 8kf1:J, 8kf1:H, 8kf1:C, 2m9r:A, 2m9s:A, 6oc9:B, 6oc9:C, 6oc9:D, 6oc9:E, 6oc9:G, 6oc9:H, 6oc9:I, 6oc9:J
2 6o3v:B 831 22 0.2500 0.0120 0.4545 1.3 6o3v:A, 6o3v:C, 6o6b:A, 6o6b:B, 6o6b:C, 6o6b:D
3 7nf4:A 504 29 0.2500 0.0198 0.3448 3.9 8crd:A, 6ev3:A, 6ev4:A, 6ev5:A, 6ev6:A, 6ev7:A, 6ev8:A, 6ev9:A, 6eva:A, 6evb:A, 6evc:A, 6evd:A, 7nf3:A, 7nf4:B, 8oed:A, 8oeh:A, 8oeo:A, 6r2p:A, 6r2r:A, 6r2t:A, 6r2z:A, 6r30:A, 6r32:A, 6r33:A, 6r34:A, 6r3f:A, 6r3g:A, 6r3i:A, 6r3j:A, 6r3l:A, 6r3n:A, 6r3o:A, 6tib:AAA, 6tic:AAA, 6tie:AAA, 6tih:AAA, 6tij:AAA, 6til:AAA, 6tin:AAA, 6tio:AAA, 4za4:A, 4za5:A, 4za7:A, 4za8:A, 4za9:A, 4zaa:A, 4zab:A
4 3gwj:D 674 18 0.2000 0.0119 0.4444 9.2 3gwj:A, 3gwj:F, 3gwj:B, 3gwj:E, 3gwj:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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