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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKL

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1om2:A 95 65 1.0000 0.6842 1.0000 1.46e-41 3awr:A, 3ax2:A, 3ax2:C, 3ax5:C, 2v1s:D, 2v1s:E, 2v1t:A
2 5az7:A 434 65 0.9538 0.1429 0.9538 1.32e-25 3awr:B, 3ax2:E, 3ax2:G, 3ax3:A, 3ax3:G, 3ax3:C, 3ax3:E, 3ax5:A, 5az6:B, 5az6:A, 5az8:A, 2v1s:A, 2v1s:B, 2v1s:C, 2v1s:F, 2v1t:B
3 8a0c:A 1116 35 0.1538 0.0090 0.2857 1.4 8a0c:B, 8a0m:A, 8a0m:C
4 8a0m:B 964 35 0.1538 0.0104 0.2857 1.4
5 8a0m:D 975 35 0.1538 0.0103 0.2857 1.5
6 6hiy:DA 1426 55 0.2308 0.0105 0.2727 3.4
7 6hiv:DA 1557 55 0.2308 0.0096 0.2727 3.4 6hiw:DA, 7pub:DA
8 7d5c:A 919 52 0.1846 0.0131 0.2308 4.9
9 4b3g:A 614 54 0.2308 0.0244 0.2778 5.0 4b3g:B
10 2jie:A 445 53 0.2923 0.0427 0.3585 5.4 2o9r:A, 2o9t:A, 2z1s:A
11 6bvv:A 416 49 0.2000 0.0312 0.2653 8.7 6bw9:A, 6bwa:A, 6bwb:A, 8fub:A, 8fzm:A, 8fzm:C, 8hkw:A, 8hkw:B, 7jjl:A, 7lf4:A, 7lf4:C, 7lfc:A, 7rfy:A, 7rg5:A, 5xzx:A
12 6hxq:B 410 24 0.1385 0.0220 0.3750 8.9
13 8jal:B 573 21 0.1385 0.0157 0.4286 9.7 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K
14 7dnp:A 174 34 0.1692 0.0632 0.3235 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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