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BioLiP
>protein
DADLAKKNNCIACHQVETKVVGPALKDIAAKYADKDDAATYLAGKIKGGSSGVWGQIPMPPVNVSDADAKALADWILTLK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1a56:A 81 81 1.0000 0.9877 0.9877 2.84e-51 1a8c:A, 4jcg:A, 3zow:A, 3zow:B, 3zow:C, 3zow:D, 3zow:E, 3zow:F, 3zow:G, 3zow:H, 3zow:I, 3zow:J, 3zow:K, 3zow:L, 3zow:M, 3zow:N, 3zow:O, 3zow:P, 3zow:Q, 3zow:R, 3zox:A, 3zox:B, 3zox:C, 3zox:D, 3zoy:A, 3zoy:B, 3zoy:C, 3zoy:D
2 5xec:A 82 77 0.6000 0.5854 0.6234 3.43e-31 5xed:A
3 5aur:A 83 83 0.6000 0.5783 0.5783 3.89e-29 2ai5:A, 5aur:C, 5aur:E, 5aur:G, 5aus:A, 5aus:C, 1ayg:A, 3vym:A, 1ynr:A, 1ynr:B, 1ynr:C, 1ynr:D, 4zid:A
4 1cor:A 82 77 0.5625 0.5488 0.5844 1.05e-27 6kq1:A, 6kq1:B
5 5xec:C 80 80 0.5375 0.5375 0.5375 2.91e-26 5xed:C
6 351c:A 82 77 0.5375 0.5244 0.5584 3.00e-26 451c:A, 1dvv:A, 2exv:A, 2exv:C, 2pac:A, 3x39:A, 3x39:B
7 1cch:A 82 77 0.5625 0.5488 0.5844 6.54e-26 1fi3:A, 2i8f:A
8 2d0s:A 79 81 0.4750 0.4810 0.4691 1.16e-20
9 3x15:A 87 80 0.3750 0.3448 0.3750 3.21e-08 3x15:G, 3x15:D, 3x15:J, 2zxy:A
10 4xxl:A 92 81 0.3500 0.3043 0.3457 3.93e-08
11 4xyd:B 145 79 0.2625 0.1448 0.2658 2.10e-05
12 5guw:A 142 73 0.2250 0.1268 0.2466 7.68e-05 5guw:C, 5gux:C, 3o0r:C, 3wfb:C, 3wfc:C, 3wfd:C, 3wfe:C
13 5z25:A 96 32 0.1750 0.1458 0.4375 0.002
14 5z25:A 96 16 0.1250 0.1042 0.6250 9.9
15 3cp5:A 116 37 0.1625 0.1121 0.3514 0.005 6cuk:A, 6cun:A
16 1h31:B 138 33 0.1750 0.1014 0.4242 0.022 1h31:D, 1h31:F, 1h31:H, 1h32:B, 1h33:B, 2oz1:B, 2oz1:D, 2oz1:F, 2oz1:H
17 1fj0:A 114 47 0.1875 0.1316 0.3191 0.049 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
18 1r5o:A 409 49 0.2250 0.0440 0.3673 0.14 1r5n:A
19 8hev:H 417 29 0.1750 0.0336 0.4828 0.24 8hev:A, 8hev:B, 8hev:C, 8hev:U, 8hev:G, 8hev:J, 8hev:L, 8hev:V, 8hev:I, 8hev:K, 8hev:M
20 1qn2:A 99 19 0.1250 0.1010 0.5263 0.86 1qn2:B, 1qn2:C
21 1fcd:C 174 22 0.1375 0.0632 0.5000 0.90 1fcd:D
22 3vrd:A 174 73 0.2625 0.1207 0.2877 2.1
23 7msy:A 292 28 0.1625 0.0445 0.4643 2.2 6vqp:A
24 5znj:A 563 43 0.1250 0.0178 0.2326 2.7 5znk:A
25 2blf:B 81 77 0.2500 0.2469 0.2597 4.7 2bpb:B, 2c9x:B, 2ca3:B, 2ca4:B
26 3u9e:B 288 40 0.1750 0.0486 0.3500 5.5 3u9e:A, 3uf6:A, 3uf6:B
27 6m0q:A 504 51 0.2000 0.0317 0.3137 6.3 4fas:A, 4fas:C, 4fas:B, 1fgj:A, 1fgj:B, 6m0p:A, 6m0p:C, 6m0p:E, 6m0q:C, 6m0q:E, 6m0q:G, 6m0q:I, 6m0q:K, 4n4n:A, 4n4n:C, 4n4n:E, 4n4o:A, 4n4o:C, 4n4o:E
28 3oa8:B 180 22 0.1375 0.0611 0.5000 6.8 3oa8:D, 3oa8:F, 3ocd:B, 3ocd:D
29 1kop:A 223 22 0.1250 0.0448 0.4545 8.9 8dpc:A, 8dpc:C, 8dpc:E, 8dpc:G, 8dpo:A, 8dpo:C, 8dpo:E, 8dpo:G, 8dqf:A, 8dqf:C, 8dqf:E, 8dqf:G, 8dr2:A, 8dr2:C, 8dr2:E, 8dr2:G, 8drb:A, 8drb:C, 8drb:E, 8drb:G, 8dyq:A, 8dyq:C, 8dyq:E, 8dyq:G, 1kop:B, 1koq:A, 1koq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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