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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
DADDLDLQRVGARLAARAQIRDIRLLRTQAAVHRAPKLTYDLEFEPAVDADPATISAFVVRISCHLRIQNQDVATADFEF
AALFDYHLQEGEDDPTEEELTAYAATTGRFALYPYIREYVYDLTGRLALPPLTLEILS

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mtw:C 138 138 0.9275 0.9275 0.9275 2.07e-82 5mtw:A, 5mtw:D, 5mtw:B
2 5hxm:A 1060 49 0.1159 0.0151 0.3265 1.4 5f7u:A, 5hpo:A, 5i0d:A, 5i0d:B, 4kmq:A, 4kwu:A
3 1ozb:A 144 23 0.0797 0.0764 0.4783 6.4 1ozb:B, 1ozb:C, 1ozb:D
4 6o9l:T 237 51 0.0942 0.0549 0.2549 9.9 8bvw:R, 8byq:R, 8bz1:R, 7eg8:T, 7ega:T, 7egb:T, 7egc:T, 7ena:FB, 7enc:FB, 8gxq:FB, 8gxs:FB, 5iy6:T, 5iy7:T, 5iy8:T, 5iy9:T, 5iya:T, 5iyb:T, 5iyc:T, 5iyd:T, 7lbm:T, 7nvr:R, 7nvs:R, 7nvt:R, 7nvu:R, 7nvy:R, 7nvz:R, 7nw0:R, 8s51:R, 8s52:R, 8s5n:R, 8wak:T, 8wal:T, 8wan:T, 8wao:T, 8wap:T, 8waq:T, 8war:T, 8was:T, 7zwd:R, 7zx7:R, 7zx8:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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